Variant report

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1361168	0.83[CEU][hapmap];0.81[EUR][1000 genomes]
rs1832413	0.83[CEU][hapmap];0.82[EUR][1000 genomes]
rs1832415	0.95[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1856309	0.86[CEU][hapmap]
rs1890274	0.95[CEU][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2248237	0.85[YRI][hapmap]
rs2248801	0.85[YRI][hapmap]
rs2248950	1.00[YRI][hapmap]
rs2249263	0.85[YRI][hapmap]
rs2255496	1.00[YRI][hapmap]
rs2518160	1.00[YRI][hapmap]
rs2518166	0.85[YRI][hapmap]
rs2518167	0.82[YRI][hapmap]
rs2518171	0.82[YRI][hapmap]
rs2518185	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2518232	1.00[YRI][hapmap]
rs2788279	0.82[YRI][hapmap]
rs2788280	0.85[YRI][hapmap]
rs2788282	1.00[YRI][hapmap]
rs2852518	0.83[AMR][1000 genomes]
rs2852519	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2852520	0.92[AMR][1000 genomes]
rs6911953	0.83[CEU][hapmap]
rs9390745	0.83[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101851000-101882000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:101864400-101882800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr6:101869200-101878400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:101870600-101882600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:101871400-101878400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:101874000-101877000	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:101874800-101876600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr6:101875800-101876600	Weak transcription	Fetal Brain Male	brain

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