Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1361168	0.85[CEU][hapmap];0.81[MEX][hapmap];0.83[EUR][1000 genomes]
rs1832413	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs1832415	1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[GIH][hapmap];0.92[LWK][hapmap];0.83[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1856309	0.88[CEU][hapmap];0.88[MEX][hapmap];0.83[EUR][1000 genomes]
rs1890274	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2248237	0.87[YRI][hapmap]
rs2248801	0.87[YRI][hapmap]
rs2248950	1.00[YRI][hapmap]
rs2249263	0.87[YRI][hapmap]
rs2255496	0.85[MEX][hapmap];1.00[YRI][hapmap]
rs2518155	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2518160	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[YRI][hapmap]
rs2518166	0.87[YRI][hapmap]
rs2518167	0.85[YRI][hapmap]
rs2518171	0.87[YRI][hapmap]
rs2518232	1.00[YRI][hapmap]
rs2788279	0.87[YRI][hapmap]
rs2788280	0.87[YRI][hapmap]
rs2788282	1.00[YRI][hapmap]
rs2852518	0.82[AMR][1000 genomes]
rs2852519	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2852520	0.91[AMR][1000 genomes]
rs6911953	0.85[CEU][hapmap];0.94[MEX][hapmap];0.83[EUR][1000 genomes]
rs9373612	0.83[EUR][1000 genomes]
rs9390745	0.85[CEU][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2518185	C5orf27	trans	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101851000-101882000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:101860800-101871000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:101864400-101871000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:101864400-101882800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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