Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:101884939..101886489-chr6:101898310..101900658,2	K562	blood:

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12211524	1.00[JPT][hapmap]
rs1832415	1.00[ASW][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[YRI][hapmap]
rs2248237	0.87[YRI][hapmap]
rs2248801	0.87[YRI][hapmap]
rs2248950	1.00[YRI][hapmap]
rs2249263	0.87[YRI][hapmap]
rs2255496	0.92[CEU][hapmap];0.93[MEX][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs2518155	1.00[YRI][hapmap]
rs2518166	0.87[YRI][hapmap]
rs2518167	0.85[YRI][hapmap]
rs2518171	0.87[YRI][hapmap]
rs2518185	1.00[ASW][hapmap];0.92[LWK][hapmap];1.00[YRI][hapmap]
rs2518229	0.83[EUR][1000 genomes]
rs2518232	1.00[YRI][hapmap]
rs2787564	1.00[JPT][hapmap]
rs2787565	1.00[JPT][hapmap]
rs2788279	0.87[YRI][hapmap]
rs2788280	0.80[CEU][hapmap];0.87[YRI][hapmap];0.80[EUR][1000 genomes]
rs2788282	1.00[YRI][hapmap]
rs2852525	1.00[JPT][hapmap]
rs2852527	1.00[JPT][hapmap]
rs997279	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv886459	chr6:101880376-101951502	Weak transcription Enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv886460	chr6:101890395-101951502	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101893200-101900200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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