Variant report

Variant	rs2518264
Chromosome Location	chr6:102287288-102287289
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10485276	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11962789	0.90[ASN][1000 genomes]
rs1325060	0.85[CEU][hapmap]
rs1340266	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1361444	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1408767	0.82[ASN][1000 genomes]
rs1408768	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2038842	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2039853	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2147714	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2246394	1.00[CEU][hapmap]
rs2399636	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2518191	0.82[ASN][1000 genomes]
rs2518193	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2518198	0.87[CEU][hapmap]
rs2518200	0.87[CEU][hapmap]
rs2518201	0.86[CEU][hapmap]
rs2518202	1.00[CEU][hapmap]
rs2518203	0.86[CEU][hapmap]
rs2518206	0.82[ASN][1000 genomes]
rs2518266	0.86[CEU][hapmap]
rs2518267	0.82[ASN][1000 genomes]
rs2518268	0.82[ASN][1000 genomes]
rs2518270	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2764218	0.86[CEU][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2764220	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2764222	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2764223	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2764225	0.82[ASN][1000 genomes]
rs2764226	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2764228	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2764229	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2764230	1.00[CEU][hapmap]
rs2764233	1.00[CEU][hapmap]
rs2764236	0.86[CEU][hapmap]
rs2791813	1.00[CEU][hapmap]
rs2791819	1.00[CEU][hapmap]
rs2791823	1.00[CEU][hapmap]
rs2791826	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2791827	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2791832	1.00[CEU][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2791834	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2791837	1.00[CEU][hapmap]
rs4839802	0.82[ASN][1000 genomes]
rs4840195	0.86[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4840196	0.86[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6922753	0.86[CEU][hapmap]
rs7775876	0.80[ASN][1000 genomes]
rs9322611	1.00[CEU][hapmap]
rs9377306	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9377307	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9377308	0.82[ASN][1000 genomes]
rs9386293	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9386294	0.90[ASN][1000 genomes]
rs9390785	0.82[ASN][1000 genomes]
rs9390788	0.90[ASN][1000 genomes]
rs9399732	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9399733	0.81[ASN][1000 genomes]
rs9404148	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9498701	0.86[CEU][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9498702	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032499	chr6:102069885-102720998	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830743	chr6:102284082-102459192	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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