Variant report

Variant	rs2520488
Chromosome Location	chr4:149909951-149909952
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10014370	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10016677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11940147	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11944377	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12508150	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13108922	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17025307	1.00[ASN][1000 genomes]
rs17025566	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17025568	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17025674	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17723371	1.00[ASN][1000 genomes]
rs2051709	0.83[AFR][1000 genomes]
rs2520489	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2520493	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28823617	1.00[ASN][1000 genomes]
rs2884516	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28858806	1.00[ASN][1000 genomes]
rs3934944	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4370116	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4527455	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4835144	1.00[ASN][1000 genomes]
rs4835145	1.00[ASN][1000 genomes]
rs4835150	1.00[ASN][1000 genomes]
rs4835552	1.00[ASN][1000 genomes]
rs524379	1.00[ASN][1000 genomes]
rs58110064	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59154095	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59945218	1.00[ASN][1000 genomes]
rs60745952	1.00[ASN][1000 genomes]
rs67450776	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72737803	1.00[ASN][1000 genomes]
rs72737810	1.00[ASN][1000 genomes]
rs72737822	1.00[ASN][1000 genomes]
rs72737827	1.00[ASN][1000 genomes]
rs72737863	1.00[ASN][1000 genomes]
rs73856290	1.00[ASN][1000 genomes]
rs73856302	1.00[ASN][1000 genomes]
rs7657863	0.93[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs996834	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9992084	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149907800-149910000	Enhancers	Stomach Mucosa	stomach
2	chr4:149907800-149910400	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr4:149909600-149910800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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