Variant report

Variant	rs2884516
Chromosome Location	chr4:149902829-149902830
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10014370	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10016677	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11940147	1.00[ASN][1000 genomes]
rs11944377	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12508150	1.00[ASN][1000 genomes]
rs13108922	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17025307	1.00[ASN][1000 genomes]
rs17025566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17025568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17025674	1.00[ASN][1000 genomes]
rs17723371	1.00[ASN][1000 genomes]
rs2520488	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2520489	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2520493	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28823617	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28858806	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3934944	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4370116	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4527455	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4835144	1.00[ASN][1000 genomes]
rs4835145	1.00[ASN][1000 genomes]
rs4835150	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4835552	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs524379	1.00[ASN][1000 genomes]
rs58110064	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59154095	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59945218	1.00[ASN][1000 genomes]
rs60745952	1.00[ASN][1000 genomes]
rs67450776	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72737803	1.00[ASN][1000 genomes]
rs72737810	1.00[ASN][1000 genomes]
rs72737822	1.00[ASN][1000 genomes]
rs72737827	1.00[ASN][1000 genomes]
rs72737863	1.00[ASN][1000 genomes]
rs73856290	1.00[ASN][1000 genomes]
rs73856302	1.00[ASN][1000 genomes]
rs7657863	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs996834	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9992084	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461677	chr4:149794284-149903982	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv595686	chr4:149794284-149903982	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv470083	chr4:149817052-149903982	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:149899600-149903000	Enhancers	Colon Smooth Muscle	Colon
2	chr4:149899600-149903000	Enhancers	Fetal Stomach	stomach
3	chr4:149900200-149903200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr4:149902000-149905200	Enhancers	Primary B cells from peripheral blood	blood
5	chr4:149902200-149903600	Enhancers	Primary B cells from cord blood	blood
6	chr4:149902800-149908400	Weak transcription	Cortex derived primary cultured neurospheres	brain

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