Variant report
| Variant | rs2520490 |
|---|---|
| Chromosome Location | chr4:149911469-149911470 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs10014366 | 0.99[ASN][1000 genomes] |
| rs10213414 | 0.85[ASN][1000 genomes] |
| rs11934703 | 0.92[ASN][1000 genomes] |
| rs12645768 | 0.85[ASN][1000 genomes] |
| rs13435788 | 0.85[ASN][1000 genomes] |
| rs17725979 | 0.94[ASN][1000 genomes] |
| rs2051709 | 0.99[ASN][1000 genomes] |
| rs2520492 | 0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4287984 | 0.91[ASN][1000 genomes] |
| rs4355370 | 0.83[ASN][1000 genomes] |
| rs4449392 | 0.92[ASN][1000 genomes] |
| rs4455396 | 0.92[ASN][1000 genomes] |
| rs4485801 | 0.92[ASN][1000 genomes] |
| rs4527452 | 0.84[ASN][1000 genomes] |
| rs4532218 | 0.84[ASN][1000 genomes] |
| rs4616731 | 0.83[ASN][1000 genomes] |
| rs4835555 | 0.90[ASN][1000 genomes] |
| rs67046168 | 0.96[ASN][1000 genomes] |
| rs6832649 | 0.87[ASN][1000 genomes] |
| rs6851434 | 0.92[ASN][1000 genomes] |
| rs764005 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7668770 | 0.87[ASN][1000 genomes] |
| rs7673586 | 0.87[ASN][1000 genomes] |
| rs7690129 | 0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes] |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs2520490 | DCLK2 | cis | parietal | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:149910000-149911600 | Weak transcription | Stomach Mucosa | stomach |
