Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10452707	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11972101	1.00[MEX][hapmap]
rs11981404	1.00[CEU][hapmap]
rs17142911	1.00[CEU][hapmap]
rs1922524	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2057875	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2178700	0.89[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2527304	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2527305	1.00[AMR][1000 genomes]
rs2707439	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2707440	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2707444	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2707445	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2707446	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2707447	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2707448	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2707449	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2906253	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4392778	1.00[MEX][hapmap]
rs4394286	1.00[MEX][hapmap]
rs4425646	1.00[MEX][hapmap]
rs60201646	1.00[AMR][1000 genomes]
rs7456388	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70827200-70835000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr7:70829600-70838200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:70829800-70837000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:70831400-70837800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:70831400-70837800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:70831800-70835000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:70832600-70835600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr7:70832800-70834000	Enhancers	Fetal Brain Male	brain

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