Variant report

Variant	rs60201646
Chromosome Location	chr7:70832584-70832585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10452707	1.00[AMR][1000 genomes]
rs1922524	1.00[AMR][1000 genomes]
rs2057875	1.00[AMR][1000 genomes]
rs2178700	1.00[AMR][1000 genomes]
rs2527302	1.00[AMR][1000 genomes]
rs2527304	1.00[AMR][1000 genomes]
rs2527305	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2707439	1.00[AMR][1000 genomes]
rs2707440	1.00[AMR][1000 genomes]
rs2707444	1.00[AMR][1000 genomes]
rs2707445	1.00[AMR][1000 genomes]
rs2707446	1.00[AMR][1000 genomes]
rs2707447	1.00[AMR][1000 genomes]
rs2707448	1.00[AMR][1000 genomes]
rs2707449	1.00[AMR][1000 genomes]
rs2906253	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70827200-70835000	Weak transcription	Fetal Muscle Trunk	muscle
2	chr7:70829600-70838200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:70829800-70837000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:70831400-70837800	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:70831400-70837800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:70831800-70835000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr7:70832200-70832600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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