Variant report

Variant	rs2707445
Chromosome Location	chr7:70835251-70835252
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10452707	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1922524	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2057875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2178700	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2527302	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2527304	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2527305	1.00[AMR][1000 genomes]
rs2707439	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2707440	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2707444	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2707446	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2707447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2707448	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2707449	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2906253	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60201646	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70829600-70838200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr7:70829800-70837000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:70831400-70837800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr7:70831400-70837800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr7:70832600-70835600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:70835000-70837600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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