Variant report

Variant	rs252935
Chromosome Location	chr5:5498909-5498910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs2264076	0.81[ASN][1000 genomes]
rs252928	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs252929	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs252930	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs252934	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs252937	0.87[ASN][1000 genomes]
rs252940	0.84[EUR][1000 genomes]
rs2578513	0.84[EUR][1000 genomes]
rs2578514	0.84[EUR][1000 genomes]
rs2578515	0.83[EUR][1000 genomes]
rs2578516	0.84[EUR][1000 genomes]
rs2578517	0.81[ASN][1000 genomes]
rs2578518	0.86[ASN][1000 genomes]
rs2578520	0.81[ASN][1000 genomes]
rs2578521	0.86[ASN][1000 genomes]
rs2578522	0.86[ASN][1000 genomes]
rs2578527	0.82[EUR][1000 genomes]
rs2591694	0.82[EUR][1000 genomes]
rs2591696	0.82[EUR][1000 genomes]
rs2591697	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2591707	0.83[EUR][1000 genomes]
rs2591708	0.86[ASN][1000 genomes]
rs2619829	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2619830	0.86[ASN][1000 genomes]
rs2619831	0.86[ASN][1000 genomes]
rs2619832	0.86[ASN][1000 genomes]
rs2619833	0.86[ASN][1000 genomes]
rs2619855	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2652702	0.86[ASN][1000 genomes]
rs2652703	0.86[ASN][1000 genomes]
rs2652704	0.86[ASN][1000 genomes]
rs2652705	0.82[EUR][1000 genomes]
rs2652706	0.81[ASN][1000 genomes]
rs2652707	0.82[EUR][1000 genomes]
rs2652715	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2652726	0.86[ASN][1000 genomes]
rs2652727	0.85[ASN][1000 genomes]
rs2918251	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2928223	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2928225	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs719080	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757981	chr5:5447098-5764620	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2759319	chr5:5447098-5764620	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:5494800-5503800	Weak transcription	GM12878-XiMat	blood
2	chr5:5498000-5499600	Weak transcription	Fetal Brain Female	brain
3	chr5:5498600-5505000	Weak transcription	Fetal Brain Male	brain

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