Variant report

Variant	rs252937
Chromosome Location	chr5:5497900-5497901
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs252928	0.87[ASN][1000 genomes]
rs252929	0.83[ASN][1000 genomes]
rs252930	0.83[ASN][1000 genomes]
rs252934	0.91[ASN][1000 genomes]
rs252935	0.87[ASN][1000 genomes]
rs252938	0.84[ASN][1000 genomes]
rs2591697	0.82[ASN][1000 genomes]
rs2619829	0.82[ASN][1000 genomes]
rs2619855	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2652715	0.83[ASN][1000 genomes]
rs2918251	0.81[ASN][1000 genomes]
rs2928223	0.86[ASN][1000 genomes]
rs2928225	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs719080	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757981	chr5:5447098-5764620	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2759319	chr5:5447098-5764620	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv3411514	chr5:5495732-5497984	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1008476	chr5:5495880-5497926	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3471522	chr5:5495931-5497962	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3471523	chr5:5495931-5497962	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:5494800-5503800	Weak transcription	GM12878-XiMat	blood
2	chr5:5495200-5498400	Enhancers	Brain Germinal Matrix	brain
3	chr5:5496400-5498000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:5496400-5498000	Enhancers	Fetal Brain Female	brain
5	chr5:5496800-5498600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:5497000-5498000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr5:5497200-5498000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr5:5497200-5498600	Enhancers	Fetal Brain Male	brain
9	chr5:5497400-5498000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr5:5497400-5498400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr5:5497600-5498400	Enhancers	Fetal Stomach	stomach
12	chr5:5497800-5498000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr5:5497800-5498000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr5:5497800-5498000	Enhancers	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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