Variant report

Variant	rs2918251
Chromosome Location	chr5:5517559-5517560
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MED10-14	chr5:5517459-5517638	NONHSAT100179

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs2264076	0.94[ASN][1000 genomes]
rs252928	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs252929	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs252930	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs252934	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs252935	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs252937	0.81[ASN][1000 genomes]
rs2578513	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2578514	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2578515	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2578516	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2578517	0.86[ASN][1000 genomes]
rs2578518	0.90[ASN][1000 genomes]
rs2578520	0.95[ASN][1000 genomes]
rs2578521	0.90[ASN][1000 genomes]
rs2578522	0.90[ASN][1000 genomes]
rs2578523	0.80[ASN][1000 genomes]
rs2578527	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2578529	0.84[ASN][1000 genomes]
rs2591694	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2591696	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2591697	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2591702	0.81[ASN][1000 genomes]
rs2591707	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2591708	0.90[ASN][1000 genomes]
rs2619829	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2619830	0.90[ASN][1000 genomes]
rs2619831	0.90[ASN][1000 genomes]
rs2619832	0.90[ASN][1000 genomes]
rs2619833	0.90[ASN][1000 genomes]
rs2619834	0.84[ASN][1000 genomes]
rs2619855	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2652702	0.90[ASN][1000 genomes]
rs2652703	0.90[ASN][1000 genomes]
rs2652704	0.90[ASN][1000 genomes]
rs2652705	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2652706	0.95[ASN][1000 genomes]
rs2652707	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2652715	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2652726	0.90[ASN][1000 genomes]
rs2652727	0.89[ASN][1000 genomes]
rs2928223	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2928225	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs719080	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757981	chr5:5447098-5764620	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2759319	chr5:5447098-5764620	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv596941	chr5:5511990-5636458	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv596942	chr5:5511990-5722063	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:5517000-5518000	Active TSS	H9 Cell Line	embryonic stem cell
2	chr5:5517200-5520400	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr5:5517200-5521200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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