Variant report

Variant	rs2546934
Chromosome Location	chr5:167395774-167395775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1862415	0.90[ASN][1000 genomes]
rs1862416	0.88[ASN][1000 genomes]
rs36064369	0.88[ASN][1000 genomes]
rs7709317	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167385800-167407400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:167387800-167400600	Weak transcription	Right Atrium	heart
3	chr5:167388000-167396800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:167388200-167407600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:167391600-167410200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:167392800-167396800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:167394200-167396200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:167394200-167396400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr5:167394200-167396400	Strong transcription	NHEK	skin
10	chr5:167394400-167396000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr5:167394600-167395800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr5:167394800-167396000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr5:167394800-167396000	Enhancers	HSMMtube	muscle
14	chr5:167394800-167397200	Weak transcription	Brain Anterior Caudate	brain
15	chr5:167395000-167395800	Weak transcription	NH-A	brain
16	chr5:167395000-167396400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:167395000-167396800	Weak transcription	Right Ventricle	heart
18	chr5:167395000-167397000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr5:167395000-167397000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr5:167395200-167396200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr5:167395200-167396200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr5:167395200-167396200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr5:167395200-167396400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr5:167395200-167399800	Weak transcription	Fetal Lung	lung
25	chr5:167395200-167406800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr5:167395400-167396800	Weak transcription	HSMM	muscle
27	chr5:167395600-167396600	Enhancers	Left Ventricle	heart

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