Variant report

Variant	rs36064369
Chromosome Location	chr5:167396567-167396568
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1862415	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1862416	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2546934	0.88[ASN][1000 genomes]
rs7709317	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830546	chr5:167303135-167456271	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:167385800-167407400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:167387800-167400600	Weak transcription	Right Atrium	heart
3	chr5:167388000-167396800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr5:167388200-167407600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:167391600-167410200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr5:167392800-167396800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:167394800-167397200	Weak transcription	Brain Anterior Caudate	brain
8	chr5:167395000-167396800	Weak transcription	Right Ventricle	heart
9	chr5:167395000-167397000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr5:167395000-167397000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr5:167395200-167399800	Weak transcription	Fetal Lung	lung
12	chr5:167395200-167406800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:167395400-167396800	Weak transcription	HSMM	muscle
14	chr5:167395600-167396600	Enhancers	Left Ventricle	heart
15	chr5:167395800-167397200	Enhancers	NH-A	brain
16	chr5:167395800-167400800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr5:167396000-167396600	Weak transcription	HSMMtube	muscle
18	chr5:167396200-167396800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:167396200-167397000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr5:167396200-167397000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr5:167396200-167407000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr5:167396400-167397000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr5:167396400-167397800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr5:167396400-167401600	Weak transcription	NHEK	skin

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