Variant report

Variant rs2550270
Chromosome Location chr3:195484244-195484245
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:195477800-195488600 Strong transcription Rectal Mucosa Donor 31 rectum
2 chr3:195478400-195488600 Strong transcription Rectal Mucosa Donor 29 rectum
3 chr3:195479600-195484600 Strong transcription Colonic Mucosa Colon
4 chr3:195479600-195492000 Strong transcription Sigmoid Colon Sigmoid Colon
5 chr3:195480200-195484600 Enhancers ES-UCSF4 Cell Line embryonic stem cell
6 chr3:195480200-195488000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
7 chr3:195481000-195484400 Weak transcription Fetal Thymus thymus
8 chr3:195482600-195484400 Enhancers Fetal Muscle Trunk muscle
9 chr3:195482600-195486000 Enhancers Fetal Brain Male brain
10 chr3:195482600-195487600 Enhancers Fetal Muscle Leg muscle
11 chr3:195482800-195484400 Enhancers Primary Natural Killer cells fromperipheralblood blood
12 chr3:195482800-195484800 Enhancers Primary T killer naive cells fromperipheralblood blood
13 chr3:195483000-195484800 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
14 chr3:195483200-195485000 Enhancers Ovary ovary
15 chr3:195483200-195485200 Enhancers Adipose Nuclei Adipose
16 chr3:195483200-195486000 Enhancers Fetal Brain Female brain
17 chr3:195483800-195484400 Bivalent Enhancer Fetal Stomach stomach
18 chr3:195483800-195484600 Enhancers ES-I3 Cell Line embryonic stem cell
19 chr3:195483800-195484800 Enhancers Primary T helper naive cells from peripheral blood blood
20 chr3:195483800-195485000 Enhancers Spleen Spleen
21 chr3:195483800-195485000 Enhancers HMEC breast
22 chr3:195483800-195485200 Bivalent Enhancer Brain Hippocampus Middle brain
23 chr3:195483800-195485400 Bivalent Enhancer Breast Myoepithelial Primary Cells Breast
24 chr3:195484000-195484400 Bivalent Enhancer Foreskin Melanocyte Primary Cells skin01 Skin
25 chr3:195484000-195484400 Enhancers A549 lung
26 chr3:195484000-195484600 Genic enhancers iPS DF 19.11 Cell Line embryonic stem cell
27 chr3:195484000-195484600 Bivalent Enhancer Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
28 chr3:195484000-195484600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
29 chr3:195484000-195484600 Bivalent Enhancer Foreskin Fibroblast Primary Cells skin02 Skin
30 chr3:195484000-195484600 Bivalent Enhancer Placenta Placenta
31 chr3:195484000-195484600 Enhancers Right Ventricle heart
32 chr3:195484000-195484800 Enhancers HUES6 Cell Line embryonic stem cell
33 chr3:195484000-195484800 Enhancers iPS-18 Cell Line embryonic stem cell
34 chr3:195484000-195484800 Enhancers iPS-20b Cell Line embryonic stem cell
35 chr3:195484000-195484800 Enhancers Brain Angular Gyrus brain
36 chr3:195484000-195485000 Bivalent Enhancer Cortex derived primary cultured neurospheres brain
37 chr3:195484000-195485000 Enhancers Right Atrium heart
38 chr3:195484000-195485200 Bivalent Enhancer Foreskin Melanocyte Primary Cells skin03 Skin
39 chr3:195484000-195485200 Bivalent Enhancer Brain Cingulate Gyrus brain
40 chr3:195484000-195485200 Enhancers Brain Germinal Matrix brain
41 chr3:195484000-195485200 Bivalent Enhancer Fetal Adrenal Gland Adrenal Gland
42 chr3:195484000-195485200 Bivalent Enhancer HUVEC blood vessel
43 chr3:195484000-195485400 Bivalent Enhancer Skeletal Muscle Male skeletal muscle
44 chr3:195484200-195484800 Enhancers Fetal Lung lung
45 chr3:195484200-195485000 Enhancers H1 Cell Line embryonic stem cell
46 chr3:195484200-195485000 Enhancers Fetal Heart heart
47 chr3:195484200-195486800 Weak transcription Placenta Amnion Placenta Amnion

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