Variant report

Variant	rs2553765
Chromosome Location	chr11:108758677-108758678
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108757832..108759632-chr11:108760933..108762823,2	K562	blood:
2	chr11:108757820..108759522-chr11:108793976..108796483,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10502105	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs10890884	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11212759	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs11212760	0.92[CHB][hapmap];0.92[JPT][hapmap]
rs11212765	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs11212770	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs11212815	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs11602706	0.93[CHB][hapmap];0.92[JPT][hapmap]
rs11607423	0.93[CHB][hapmap];0.91[JPT][hapmap]
rs12222436	0.93[CHB][hapmap];0.91[JPT][hapmap]
rs12225174	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs1975910	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs1975911	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2059540	1.00[CEU][hapmap]
rs2128244	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2162158	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2357324	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap]
rs2466927	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2466928	1.00[CEU][hapmap]
rs2466930	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2466939	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2466940	1.00[CEU][hapmap]
rs2514118	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2553755	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2553762	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2553766	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2615717	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2615718	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs2615728	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2615729	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2615731	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs2615732	0.81[CHB][hapmap]
rs2615736	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2615741	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2615752	0.93[CHB][hapmap];0.91[JPT][hapmap]
rs2615755	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2615760	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2624128	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2624139	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2624149	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2726871	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2726875	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2726883	0.92[CHB][hapmap];0.87[JPT][hapmap]
rs2726888	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2726893	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2726894	0.92[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2726899	1.00[CEU][hapmap]
rs2726901	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs2726902	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2726903	1.00[CEU][hapmap]
rs2726904	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap]
rs2726923	1.00[CEU][hapmap]
rs3781865	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs3824985	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs4027412	0.92[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs4754347	0.92[CHB][hapmap];0.90[JPT][hapmap]
rs4754348	0.93[CHB][hapmap];0.91[JPT][hapmap]
rs4754352	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs4754362	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs7113892	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs7130411	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs919038	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108726200-108768400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr11:108728400-108810600	Weak transcription	Left Ventricle	heart
3	chr11:108753200-108761000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:108755000-108759200	Enhancers	HUVEC	blood vessel
5	chr11:108755200-108761400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:108755400-108758800	Enhancers	NH-A	brain
7	chr11:108756000-108761000	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr11:108756000-108761000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:108756600-108759000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:108756600-108759400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr11:108756800-108759000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr11:108756800-108759600	Enhancers	Osteobl	bone
13	chr11:108757400-108761600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr11:108757600-108759400	Enhancers	Dnd41	blood
15	chr11:108757600-108760600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr11:108757600-108760800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr11:108757600-108761200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr11:108757800-108759200	Weak transcription	HSMM	muscle
19	chr11:108757800-108760800	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr11:108757800-108761000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr11:108757800-108766400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:108757800-108766800	Weak transcription	Stomach Mucosa	stomach
23	chr11:108758000-108760400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr11:108758400-108758800	Active TSS	Primary T cells from cord blood	blood
25	chr11:108758400-108758800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:108758400-108758800	Enhancers	Fetal Thymus	thymus
27	chr11:108758400-108760400	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr11:108758400-108761000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr11:108758400-108766800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr11:108758600-108760400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:108758600-108764600	Weak transcription	A549	lung
32	chr11:108758600-108766400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links