Variant report

Variant	rs2726899
Chromosome Location	chr11:108757536-108757537
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1035724	0.89[EUR][1000 genomes]
rs10502105	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10890907	0.81[EUR][1000 genomes]
rs11212751	0.80[ASN][1000 genomes]
rs11212810	0.85[AFR][1000 genomes]
rs11212822	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12794068	0.90[EUR][1000 genomes]
rs2059540	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2162158	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2357324	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2466927	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2466928	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2466939	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2466940	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.92[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2514118	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2514120	0.90[EUR][1000 genomes]
rs2553748	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2553755	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs2553762	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2553765	1.00[CEU][hapmap]
rs2553766	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2553767	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2615729	0.83[CEU][hapmap]
rs2615732	0.89[CHB][hapmap]
rs2615733	0.94[ASN][1000 genomes]
rs2615757	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs2726893	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2726894	0.92[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2726895	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2726901	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2726902	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2726903	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2726904	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2726912	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2726923	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35273823	0.82[EUR][1000 genomes]
rs4027412	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs4754344	0.84[ASN][1000 genomes]
rs4754361	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4754362	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs919038	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108726200-108768400	Weak transcription	Primary B cells from peripheral blood	blood
2	chr11:108728400-108810600	Weak transcription	Left Ventricle	heart
3	chr11:108753200-108761000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:108754600-108758400	Weak transcription	Primary T cells from cord blood	blood
5	chr11:108755000-108759200	Enhancers	HUVEC	blood vessel
6	chr11:108755200-108757600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr11:108755200-108761400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:108755400-108757600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr11:108755400-108758800	Enhancers	NH-A	brain
10	chr11:108755600-108757600	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr11:108755600-108757800	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr11:108755800-108757600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr11:108755800-108757800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr11:108756000-108761000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:108756000-108761000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:108756400-108758000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr11:108756400-108758400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:108756600-108757800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr11:108756600-108759000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr11:108756600-108759400	Enhancers	Muscle Satellite Cultured Cells	--
21	chr11:108756800-108757800	Enhancers	HSMM	muscle
22	chr11:108756800-108759000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:108756800-108759600	Enhancers	Osteobl	bone
24	chr11:108757000-108757600	Enhancers	HSMMtube	muscle
25	chr11:108757000-108757800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:108757000-108758000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr11:108757000-108758000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr11:108757200-108757600	Flanking Active TSS	A549	lung
29	chr11:108757200-108758400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:108757200-108758600	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr11:108757400-108757800	Enhancers	Stomach Mucosa	stomach
32	chr11:108757400-108757800	Enhancers	NHEK	skin
33	chr11:108757400-108761600	Weak transcription	H1 Cell Line	embryonic stem cell

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