The 2.0 version of rSNPBase

Variant report

Variant rs2553748
Chromosome Location chr11:108767599-108767600
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr11:108726200-108768400 Weak transcription Primary B cells from peripheral blood blood
2 chr11:108728400-108810600 Weak transcription Left Ventricle heart
3 chr11:108760800-108767800 Weak transcription Breast Myoepithelial Primary Cells Breast
4 chr11:108762000-108767800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
5 chr11:108763000-108797600 Weak transcription Fetal Muscle Leg muscle
6 chr11:108764800-108767600 Enhancers ES-I3 Cell Line embryonic stem cell
7 chr11:108764800-108768000 Enhancers HUES64 Cell Line embryonic stem cell
8 chr11:108764800-108768200 Enhancers HUES48 Cell Line embryonic stem cell
9 chr11:108765000-108768000 Enhancers HUES6 Cell Line embryonic stem cell
10 chr11:108765000-108768400 Enhancers Hela-S3 cervix
11 chr11:108765600-108768600 Weak transcription K562 blood
12 chr11:108765800-108768000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr11:108765800-108768800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
14 chr11:108766000-108768200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
15 chr11:108766000-108768400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
16 chr11:108766200-108768800 Enhancers Cortex derived primary cultured neurospheres brain
17 chr11:108766400-108768000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
18 chr11:108766400-108768000 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
19 chr11:108766400-108768200 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
20 chr11:108766400-108768400 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
21 chr11:108766600-108767600 Enhancers HSMM muscle
22 chr11:108766600-108767600 Flanking Active TSS NH-A brain
23 chr11:108766600-108775600 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
24 chr11:108766800-108768000 Enhancers NHLF lung
25 chr11:108766800-108769800 Weak transcription H1 Cell Line embryonic stem cell
26 chr11:108767000-108767800 Weak transcription iPS-20b Cell Line embryonic stem cell
27 chr11:108767000-108768000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
28 chr11:108767000-108768200 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
29 chr11:108767000-108768200 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
30 chr11:108767000-108768200 Enhancers NHEK skin
31 chr11:108767000-108768400 Enhancers Muscle Satellite Cultured Cells --
32 chr11:108767000-108777200 Weak transcription Adipose Nuclei Adipose
33 chr11:108767200-108768000 Enhancers A549 lung
34 chr11:108767200-108768200 Enhancers Osteobl bone
35 chr11:108767200-108768400 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
36 chr11:108767200-108768400 Enhancers HMEC breast
37 chr11:108767400-108767600 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
38 chr11:108767400-108767600 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Male --
39 chr11:108767400-108768000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
40 chr11:108767400-108768600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
41 chr11:108767400-108768600 Enhancers HUVEC blood vessel
42 chr11:108767400-108769000 Weak transcription Primary hematopoietic stem cells short term culture blood

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Last update: Aug 31, 2015