Variant report

Variant	rs919038
Chromosome Location	chr11:108729575-108729576
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL1	chr11:108729143-108729849	HCT-116	colon:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108727866..108730452-chr11:108738042..108739776,2	K562	blood:
2	chr11:108728605..108731193-chr11:108732068..108735115,3	K562	blood:

Variant related genes	Relation type
DDX10	TF binding region
ENSG00000178105	Chromatin interaction

Extended variants
information (count: 157 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:153)

rs_ID	r²[population]
rs1035724	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10502105	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10890881	0.84[ASN][1000 genomes]
rs10890882	0.84[ASN][1000 genomes]
rs10890884	0.89[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10890907	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11212749	0.86[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs11212753	0.82[ASN][1000 genomes]
rs11212754	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11212757	0.85[ASN][1000 genomes]
rs11212759	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11212760	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11212763	0.85[ASN][1000 genomes]
rs11212765	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11212766	0.83[ASN][1000 genomes]
rs11212767	0.85[ASN][1000 genomes]
rs11212768	0.85[ASN][1000 genomes]
rs11212769	0.86[ASN][1000 genomes]
rs11212770	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs11212815	0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs11212820	0.90[ASN][1000 genomes]
rs11212821	0.90[ASN][1000 genomes]
rs11212822	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11602510	0.84[ASN][1000 genomes]
rs11602706	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11603815	0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs11605243	0.84[ASN][1000 genomes]
rs11606434	0.82[ASN][1000 genomes]
rs11607423	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12222436	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12222783	0.81[ASN][1000 genomes]
rs12225174	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs12794068	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1381824	0.84[ASN][1000 genomes]
rs1947926	0.83[ASN][1000 genomes]
rs1947927	0.83[ASN][1000 genomes]
rs1975910	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs1975911	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2059540	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2126567	0.84[ASN][1000 genomes]
rs2128244	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2128246	0.85[ASN][1000 genomes]
rs2162158	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2169563	0.84[ASN][1000 genomes]
rs2290950	0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs2306117	0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2357324	1.00[CEU][hapmap];0.80[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2466927	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2466928	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2466930	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs2466935	0.83[ASN][1000 genomes]
rs2466939	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2466940	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs2514010	0.85[ASN][1000 genomes]
rs2514118	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2514120	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2553748	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2553755	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2553762	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2553765	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[JPT][hapmap]
rs2553766	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2553767	0.96[EUR][1000 genomes]
rs2615716	0.89[ASN][1000 genomes]
rs2615717	0.93[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2615718	0.86[CHB][hapmap];0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs2615728	0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2615729	0.83[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2615731	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2615732	0.81[JPT][hapmap];0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs2615736	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2615737	0.85[ASN][1000 genomes]
rs2615739	0.85[ASN][1000 genomes]
rs2615740	0.85[ASN][1000 genomes]
rs2615741	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2615752	1.00[JPT][hapmap]
rs2615755	0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2615760	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2615761	0.91[ASN][1000 genomes]
rs2624128	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2624138	0.85[ASN][1000 genomes]
rs2624139	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2624149	0.86[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2726869	0.84[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2726871	0.86[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2726875	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs2726882	0.82[ASN][1000 genomes]
rs2726883	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2726888	0.86[CHB][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs2726889	0.85[ASN][1000 genomes]
rs2726892	0.84[ASN][1000 genomes]
rs2726893	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2726894	0.92[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2726895	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2726899	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2726901	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2726902	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2726903	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2726904	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2726912	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2726922	0.84[ASN][1000 genomes]
rs2726923	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs35098485	0.82[ASN][1000 genomes]
rs35273823	0.91[EUR][1000 genomes]
rs3758909	0.82[ASN][1000 genomes]
rs3781865	0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs3824985	0.86[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs3858399	0.82[ASN][1000 genomes]
rs3858400	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs4027412	0.92[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4369370	0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs4753846	0.85[ASN][1000 genomes]
rs4753847	0.85[ASN][1000 genomes]
rs4754343	0.84[ASN][1000 genomes]
rs4754345	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4754347	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4754348	1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs4754349	0.85[ASN][1000 genomes]
rs4754352	0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4754361	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4754362	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4754364	0.90[ASN][1000 genomes]
rs57535472	0.80[ASN][1000 genomes]
rs58064663	0.85[ASN][1000 genomes]
rs58210719	0.86[ASN][1000 genomes]
rs58286414	0.83[ASN][1000 genomes]
rs61158618	0.85[ASN][1000 genomes]
rs61338713	0.85[ASN][1000 genomes]
rs61913962	0.80[ASN][1000 genomes]
rs61913965	0.82[ASN][1000 genomes]
rs61913966	0.82[ASN][1000 genomes]
rs61913967	0.80[ASN][1000 genomes]
rs61913970	0.82[ASN][1000 genomes]
rs61913972	0.84[ASN][1000 genomes]
rs61913975	0.83[ASN][1000 genomes]
rs61913978	0.84[ASN][1000 genomes]
rs61913979	0.84[ASN][1000 genomes]
rs61913980	0.84[ASN][1000 genomes]
rs61914000	0.84[ASN][1000 genomes]
rs61914001	0.84[ASN][1000 genomes]
rs61914002	0.84[ASN][1000 genomes]
rs61914003	0.84[ASN][1000 genomes]
rs61914008	0.85[ASN][1000 genomes]
rs61914010	0.85[ASN][1000 genomes]
rs61914011	0.85[ASN][1000 genomes]
rs61915779	0.80[ASN][1000 genomes]
rs7112835	0.90[ASN][1000 genomes]
rs7113892	0.86[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7130411	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs73001741	0.82[ASN][1000 genomes]
rs73001761	0.80[ASN][1000 genomes]
rs73001775	0.84[ASN][1000 genomes]
rs73005539	0.84[ASN][1000 genomes]
rs73007427	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898389	chr11:108724639-108891986	Enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108707600-108740800	Weak transcription	HMEC	breast
2	chr11:108710200-108735800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:108710200-108738200	Weak transcription	Gastric	stomach
4	chr11:108710600-108729800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr11:108715400-108738200	Weak transcription	K562	blood
6	chr11:108717600-108729600	Weak transcription	Dnd41	blood
7	chr11:108721600-108742200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:108723600-108733200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr11:108724600-108729600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:108725000-108729800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:108725000-108736600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr11:108725000-108737000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:108725000-108739600	Weak transcription	A549	lung
14	chr11:108725000-108740000	Weak transcription	NHDF-Ad	bronchial
15	chr11:108725000-108741000	Weak transcription	HSMMtube	muscle
16	chr11:108725000-108741400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr11:108725200-108729600	Weak transcription	Psoas Muscle	Psoas
18	chr11:108725400-108729800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:108725400-108730200	Weak transcription	NH-A	brain
20	chr11:108725400-108731800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr11:108725400-108734200	Weak transcription	Fetal Intestine Small	intestine
22	chr11:108725400-108737200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr11:108725400-108738400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr11:108725400-108740600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:108725400-108740800	Weak transcription	NHEK	skin
26	chr11:108725400-108741000	Weak transcription	Brain Angular Gyrus	brain
27	chr11:108725600-108729800	Weak transcription	Fetal Thymus	thymus
28	chr11:108725600-108733600	Weak transcription	Primary hematopoietic stem cells	blood
29	chr11:108725600-108733800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr11:108725800-108740000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr11:108726000-108732800	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr11:108726000-108733600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
33	chr11:108726200-108730400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:108726200-108733600	Weak transcription	GM12878-XiMat	blood
35	chr11:108726200-108740400	Weak transcription	Primary B cells from cord blood	blood
36	chr11:108726200-108768400	Weak transcription	Primary B cells from peripheral blood	blood
37	chr11:108726600-108729800	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr11:108726600-108730200	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr11:108728400-108729600	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr11:108728400-108730200	Weak transcription	Osteobl	bone
41	chr11:108728400-108732000	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr11:108728400-108735600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr11:108728400-108810600	Weak transcription	Left Ventricle	heart
44	chr11:108728600-108729600	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr11:108728600-108741000	Weak transcription	Primary T cells from cord blood	blood
46	chr11:108729000-108730000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr11:108729200-108729800	Enhancers	iPS-20b Cell Line	embryonic stem cell
48	chr11:108729200-108730000	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr11:108729400-108729600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr11:108729400-108729800	Enhancers	HUES6 Cell Line	embryonic stem cell

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