Variant report

Variant	rs2615757
Chromosome Location	chr11:108686096-108686097
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108685326..108687621-chr11:108691407..108693787,2	K562	blood:

Variant related genes	Relation type
ENSG00000255379	Chromatin interaction

Extended variants
information (count: 122 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:118)

rs_ID	r²[population]
rs10890881	0.80[EUR][1000 genomes]
rs10890882	0.81[EUR][1000 genomes]
rs10890884	0.80[EUR][1000 genomes]
rs11212749	0.81[EUR][1000 genomes]
rs11212751	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11212753	0.80[EUR][1000 genomes]
rs11212754	0.80[EUR][1000 genomes]
rs11212755	0.81[EUR][1000 genomes]
rs11212757	0.80[EUR][1000 genomes]
rs11212759	0.81[EUR][1000 genomes]
rs11212760	0.80[EUR][1000 genomes]
rs11212763	0.83[EUR][1000 genomes]
rs11212765	0.83[EUR][1000 genomes]
rs11212766	0.83[EUR][1000 genomes]
rs11212767	0.83[EUR][1000 genomes]
rs11212768	0.83[EUR][1000 genomes]
rs11212769	0.83[EUR][1000 genomes]
rs11212770	0.83[EUR][1000 genomes]
rs11602510	0.82[EUR][1000 genomes]
rs11602706	0.81[EUR][1000 genomes]
rs11603815	0.80[EUR][1000 genomes]
rs11605243	0.82[EUR][1000 genomes]
rs11606434	0.80[EUR][1000 genomes]
rs11607423	0.81[EUR][1000 genomes]
rs12222436	0.80[EUR][1000 genomes]
rs12225174	0.80[EUR][1000 genomes]
rs1381824	0.83[EUR][1000 genomes]
rs1947926	0.81[EUR][1000 genomes]
rs1947927	0.82[EUR][1000 genomes]
rs1975910	0.93[EUR][1000 genomes]
rs1975911	0.93[EUR][1000 genomes]
rs2059540	1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs2126567	0.82[EUR][1000 genomes]
rs2128244	0.83[EUR][1000 genomes]
rs2128246	0.83[EUR][1000 genomes]
rs2169563	0.83[EUR][1000 genomes]
rs2290950	0.80[EUR][1000 genomes]
rs2466928	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2466930	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2466935	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2466940	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs2514010	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2553767	0.94[ASN][1000 genomes]
rs2615716	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2615717	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2615718	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2615728	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2615729	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2615731	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2615732	0.87[CHB][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2615733	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2615736	0.83[EUR][1000 genomes]
rs2615737	0.83[EUR][1000 genomes]
rs2615739	0.83[EUR][1000 genomes]
rs2615740	0.83[EUR][1000 genomes]
rs2615741	0.83[EUR][1000 genomes]
rs2615752	0.87[EUR][1000 genomes]
rs2615755	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2615760	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2615761	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2624128	0.92[EUR][1000 genomes]
rs2624138	0.83[EUR][1000 genomes]
rs2624139	0.83[EUR][1000 genomes]
rs2624149	0.92[EUR][1000 genomes]
rs2726869	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2726871	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2726875	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2726882	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2726883	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2726888	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2726889	0.93[EUR][1000 genomes]
rs2726899	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs2726903	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[ASN][1000 genomes]
rs2726922	0.93[EUR][1000 genomes]
rs2726923	0.94[CHB][hapmap];0.87[JPT][hapmap];0.96[ASN][1000 genomes]
rs35098485	0.80[EUR][1000 genomes]
rs3758909	0.80[EUR][1000 genomes]
rs3781865	0.83[EUR][1000 genomes]
rs3824985	0.81[EUR][1000 genomes]
rs3858399	0.80[EUR][1000 genomes]
rs3858400	0.80[EUR][1000 genomes]
rs4369370	0.80[EUR][1000 genomes]
rs4753846	0.81[EUR][1000 genomes]
rs4753847	0.80[EUR][1000 genomes]
rs4754343	0.81[EUR][1000 genomes]
rs4754344	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4754345	0.81[EUR][1000 genomes]
rs4754347	0.80[EUR][1000 genomes]
rs4754348	0.82[EUR][1000 genomes]
rs4754349	0.83[EUR][1000 genomes]
rs4754352	0.83[EUR][1000 genomes]
rs57535472	0.80[EUR][1000 genomes]
rs58210719	0.83[EUR][1000 genomes]
rs58286414	0.81[EUR][1000 genomes]
rs61158618	0.83[EUR][1000 genomes]
rs61338713	0.83[EUR][1000 genomes]
rs61913962	0.80[EUR][1000 genomes]
rs61913965	0.81[EUR][1000 genomes]
rs61913966	0.80[EUR][1000 genomes]
rs61913970	0.80[EUR][1000 genomes]
rs61913972	0.81[EUR][1000 genomes]
rs61913975	0.81[EUR][1000 genomes]
rs61913978	0.83[EUR][1000 genomes]
rs61913979	0.83[EUR][1000 genomes]
rs61913980	0.82[EUR][1000 genomes]
rs61914000	0.82[EUR][1000 genomes]
rs61914001	0.82[EUR][1000 genomes]
rs61914002	0.82[EUR][1000 genomes]
rs61914003	0.82[EUR][1000 genomes]
rs61914008	0.83[EUR][1000 genomes]
rs61914010	0.83[EUR][1000 genomes]
rs61914011	0.83[EUR][1000 genomes]
rs61915165	0.85[EUR][1000 genomes]
rs73001741	0.80[EUR][1000 genomes]
rs73001761	0.80[EUR][1000 genomes]
rs73001775	0.81[EUR][1000 genomes]
rs73005539	0.82[EUR][1000 genomes]
rs73007427	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108657800-108688200	Weak transcription	NHEK	skin
2	chr11:108664200-108691000	Weak transcription	K562	blood
3	chr11:108675000-108689600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:108675600-108694800	Weak transcription	Ovary	ovary
5	chr11:108675600-108709400	Weak transcription	Left Ventricle	heart
6	chr11:108675800-108700000	Weak transcription	GM12878-XiMat	blood
7	chr11:108676000-108708000	Weak transcription	Primary B cells from cord blood	blood
8	chr11:108677600-108709600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr11:108677800-108686600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr11:108680400-108709400	Weak transcription	Primary T cells from cord blood	blood
11	chr11:108680600-108724400	Weak transcription	Aorta	Aorta
12	chr11:108686000-108686200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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