Variant report

Variant	rs2615733
Chromosome Location	chr11:108702969-108702970
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:108702373..108704312-chr11:108719216..108721359,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11212751	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1975910	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1975911	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2059540	0.94[ASN][1000 genomes]
rs2466928	0.82[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2466930	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2466935	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2466940	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2514010	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2553767	0.95[ASN][1000 genomes]
rs2615716	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2615717	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2615718	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2615728	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2615729	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2615731	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2615732	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2615752	0.85[EUR][1000 genomes]
rs2615755	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2615757	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2615760	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2615761	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2624128	0.89[EUR][1000 genomes]
rs2624149	0.89[EUR][1000 genomes]
rs2726869	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2726871	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2726875	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2726882	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2726883	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2726888	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2726889	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2726899	0.94[ASN][1000 genomes]
rs2726903	0.94[ASN][1000 genomes]
rs2726922	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2726923	0.97[ASN][1000 genomes]
rs4754344	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4754349	0.81[AMR][1000 genomes]
rs61915165	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052254	chr11:108122683-108845008	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv541164	chr11:108122683-108845008	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv898386	chr11:108409442-108831875	Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv898388	chr11:108440814-108724639	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:108675600-108709400	Weak transcription	Left Ventricle	heart
2	chr11:108676000-108708000	Weak transcription	Primary B cells from cord blood	blood
3	chr11:108677600-108709600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr11:108680400-108709400	Weak transcription	Primary T cells from cord blood	blood
5	chr11:108680600-108724400	Weak transcription	Aorta	Aorta
6	chr11:108687000-108717000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr11:108692200-108709400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:108696400-108709200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:108700200-108709600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr11:108701000-108724400	Weak transcription	NHEK	skin
11	chr11:108701200-108709000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr11:108701800-108709400	Weak transcription	GM12878-XiMat	blood
13	chr11:108702800-108712000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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