Variant report

Variant	rs256553
Chromosome Location	chr2:190740315-190740316
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:190733619..190735592-chr2:190738406..190740750,2	K562	blood:
2	chr2:190737100..190738714-chr2:190740306..190742648,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10181618	0.95[EUR][1000 genomes]
rs12693558	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16831909	1.00[CHD][hapmap]
rs1869522	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs256543	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs256544	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs256547	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs256548	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs256555	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs256559	0.95[EUR][1000 genomes]
rs256561	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs256565	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs256566	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs256569	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs256575	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs256576	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs256578	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs256579	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs256585	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs256586	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs256587	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5743022	1.00[CHD][hapmap];0.91[GIH][hapmap]
rs5743072	0.91[ASW][hapmap]
rs5743076	0.95[EUR][1000 genomes]
rs5743078	0.95[EUR][1000 genomes]
rs6434371	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs934883	1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190658200-190743800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr2:190659800-190743600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr2:190664800-190741800	Weak transcription	Brain Angular Gyrus	brain
4	chr2:190669400-190743800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr2:190681000-190743000	Weak transcription	Brain Germinal Matrix	brain
6	chr2:190684000-190743600	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr2:190685400-190741800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr2:190691000-190744200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr2:190701200-190743200	Weak transcription	Fetal Brain Male	brain
10	chr2:190701400-190744000	Weak transcription	Fetal Brain Female	brain
11	chr2:190701600-190743200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr2:190701600-190744800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr2:190701800-190745200	Weak transcription	Fetal Kidney	kidney
14	chr2:190702400-190745600	Weak transcription	Colon Smooth Muscle	Colon
15	chr2:190706800-190742800	Weak transcription	Fetal Heart	heart
16	chr2:190707000-190741400	Weak transcription	Brain Anterior Caudate	brain
17	chr2:190707400-190741200	Weak transcription	Brain Substantia Nigra	brain
18	chr2:190707600-190746000	Weak transcription	Left Ventricle	heart
19	chr2:190708400-190743400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr2:190708800-190744400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr2:190709600-190744000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr2:190710600-190741800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr2:190713200-190743400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr2:190713200-190743800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr2:190713200-190745600	Weak transcription	Pancreas	Pancrea
26	chr2:190713800-190743800	Weak transcription	Fetal Intestine Large	intestine
27	chr2:190713800-190744400	Weak transcription	Gastric	stomach
28	chr2:190713800-190744800	Weak transcription	K562	blood
29	chr2:190714600-190743800	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr2:190714600-190744000	Weak transcription	Fetal Stomach	stomach
31	chr2:190714600-190744400	Weak transcription	Psoas Muscle	Psoas
32	chr2:190714800-190745200	Weak transcription	NHEK	skin
33	chr2:190715000-190741800	Weak transcription	Aorta	Aorta
34	chr2:190715600-190744800	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr2:190716000-190743400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr2:190716600-190743400	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr2:190716600-190744200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr2:190716800-190744200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
39	chr2:190718600-190743000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr2:190718600-190745800	Weak transcription	Fetal Intestine Small	intestine
41	chr2:190719800-190743600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr2:190719800-190743800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr2:190720000-190741200	Weak transcription	Primary T cells fromperipheralblood	blood
44	chr2:190720000-190741800	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr2:190720000-190743400	Weak transcription	Duodenum Mucosa	Duodenum
46	chr2:190720000-190744000	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr2:190720000-190744000	Weak transcription	NH-A	brain
48	chr2:190720400-190741400	Weak transcription	HMEC	breast
49	chr2:190722200-190745600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr2:190725200-190746000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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