Variant report

Variant	rs6434371
Chromosome Location	chr2:190795346-190795347
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10181618	0.81[EUR][1000 genomes]
rs12693558	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1869522	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs256543	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs256544	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs256547	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs256548	0.85[EUR][1000 genomes]
rs256553	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs256559	0.90[EUR][1000 genomes]
rs256561	0.85[EUR][1000 genomes]
rs256569	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs256575	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs256576	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs256578	0.85[EUR][1000 genomes]
rs256579	0.85[EUR][1000 genomes]
rs256585	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs256587	0.85[EUR][1000 genomes]
rs934883	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875618	chr2:190789387-190883360	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:190792800-190797600	Weak transcription	HSMM	muscle
2	chr2:190792800-190797600	Weak transcription	NHDF-Ad	bronchial
3	chr2:190792800-190797800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr2:190793000-190797400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr2:190793000-190797600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr2:190795200-190797400	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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