Variant report

Variant	rs256742
Chromosome Location	chr19:37855793-37855794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:37855409..37858293-chr19:37876540..37879521,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10418740	0.82[ASN][1000 genomes]
rs1465434	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1530500	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs256737	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs256739	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs256743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2617789	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2972596	0.86[EUR][1000 genomes]
rs45483504	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62110388	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62110389	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62110390	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62110392	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62110395	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62110430	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62110431	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62110434	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7258906	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73027379	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73027386	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7408736	0.82[ASN][1000 genomes]
rs8108650	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37826600-37856200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr19:37826600-37861600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr19:37828000-37855800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr19:37842800-37856600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr19:37843800-37855800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr19:37843800-37857600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
7	chr19:37844000-37857000	ZNF genes & repeats	Liver	Liver
8	chr19:37845400-37855800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
9	chr19:37845600-37855800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr19:37846200-37856400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr19:37849200-37857000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr19:37850000-37856800	ZNF genes & repeats	A549	lung
13	chr19:37850200-37856000	Strong transcription	Fetal Lung	lung
14	chr19:37851000-37856400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr19:37851000-37856600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
16	chr19:37851600-37856000	ZNF genes & repeats	Fetal Intestine Small	intestine
17	chr19:37852000-37855800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr19:37852200-37857000	ZNF genes & repeats	Dnd41	blood
19	chr19:37852400-37855800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr19:37853000-37856200	ZNF genes & repeats	HSMM	muscle
21	chr19:37853000-37856600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
22	chr19:37853000-37856600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
23	chr19:37853000-37857000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
24	chr19:37853200-37855800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
25	chr19:37853200-37856400	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr19:37853200-37856800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
27	chr19:37853200-37857000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr19:37853200-37857200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr19:37853400-37856600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr19:37853600-37855800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
31	chr19:37853600-37855800	ZNF genes & repeats	Fetal Muscle Trunk	muscle
32	chr19:37853600-37856600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
33	chr19:37854000-37855800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
34	chr19:37854000-37855800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
35	chr19:37854200-37855800	ZNF genes & repeats	Placenta	Placenta
36	chr19:37854200-37857000	ZNF genes & repeats	Adipose Nuclei	Adipose
37	chr19:37854200-37861200	Weak transcription	Psoas Muscle	Psoas
38	chr19:37854200-37861400	Weak transcription	Small Intestine	intestine
39	chr19:37854400-37855800	ZNF genes & repeats	Fetal Muscle Leg	muscle
40	chr19:37854400-37856200	ZNF genes & repeats	Brain Germinal Matrix	brain
41	chr19:37854800-37855800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr19:37855000-37861400	Weak transcription	Fetal Heart	heart
43	chr19:37855000-37861600	Weak transcription	Aorta	Aorta
44	chr19:37855200-37855800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr19:37855200-37855800	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
46	chr19:37855200-37856000	Weak transcription	Brain Substantia Nigra	brain
47	chr19:37855200-37856400	ZNF genes & repeats	HepG2	liver
48	chr19:37855200-37860800	Weak transcription	Brain Cingulate Gyrus	brain
49	chr19:37855200-37861000	Weak transcription	Right Ventricle	heart
50	chr19:37855200-37861200	Weak transcription	Left Ventricle	heart

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