Variant report

Variant	rs1465434
Chromosome Location	chr19:37915232-37915233
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1038085	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10403307	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10425671	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11883392	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1236810	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1530500	0.87[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs2045909	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2199644	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs256737	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs256739	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs256742	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs256743	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2617789	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs320886	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs45483504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4803228	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs62110388	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62110389	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62110390	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62110392	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62110395	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62110430	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62110431	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62110434	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6508729	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs6508738	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7251097	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs73027379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73027386	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8108650	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8109709	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv579465	chr19:37868552-37917692	ZNF genes & repeats Strong transcription Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv963044	chr19:37893588-37916743	ZNF genes & repeats Weak transcription Strong transcription Active TSS	lncRNA	n/a	inside rSNPs	diseases
7	nsv833819	chr19:37899501-38051599	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37898000-37927000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr19:37898000-37956400	ZNF genes & repeats	Liver	Liver
3	chr19:37899200-37918800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr19:37900200-37927000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr19:37903200-37925000	ZNF genes & repeats	Primary T cells from cord blood	blood
6	chr19:37903200-37927200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr19:37903200-37936600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr19:37903400-37936400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
9	chr19:37906800-37915400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
10	chr19:37906800-37918000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr19:37906800-37927000	ZNF genes & repeats	Fetal Brain Female	brain
12	chr19:37906800-37936600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
13	chr19:37907600-37925000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
14	chr19:37907600-37926600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
15	chr19:37907800-37915600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
16	chr19:37907800-37926000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
17	chr19:37909200-37919400	ZNF genes & repeats	Fetal Lung	lung
18	chr19:37910600-37925000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
19	chr19:37910800-37956000	ZNF genes & repeats	Adipose Nuclei	Adipose
20	chr19:37911000-37915600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
21	chr19:37911000-37926400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
22	chr19:37911000-37927000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
23	chr19:37911200-37915400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr19:37911200-37915400	ZNF genes & repeats	Primary B cells from cord blood	blood
25	chr19:37911200-37915400	ZNF genes & repeats	Brain Anterior Caudate	brain
26	chr19:37911200-37919000	ZNF genes & repeats	Brain Hippocampus Middle	brain
27	chr19:37911200-37925000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr19:37911200-37926600	ZNF genes & repeats	Brain Substantia Nigra	brain
29	chr19:37911200-37927000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
30	chr19:37911200-37927000	ZNF genes & repeats	Dnd41	blood
31	chr19:37911200-37936600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
32	chr19:37911200-37936600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
33	chr19:37911200-37954600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
34	chr19:37911400-37915400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
35	chr19:37911400-37915600	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
36	chr19:37911400-37915600	ZNF genes & repeats	Colon Smooth Muscle	Colon
37	chr19:37911400-37919000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr19:37911400-37919200	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
39	chr19:37911400-37919400	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr19:37911400-37923000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
41	chr19:37911400-37925600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr19:37912000-37925000	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
43	chr19:37912200-37915400	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
44	chr19:37912400-37916400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr19:37912400-37916600	Weak transcription	HSMMtube	muscle
46	chr19:37913000-37915400	Weak transcription	Gastric	stomach
47	chr19:37913000-37915400	Weak transcription	Lung	lung
48	chr19:37913000-37916600	Weak transcription	Pancreas	Pancrea
49	chr19:37913200-37915800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr19:37913400-37917000	Strong transcription	Skeletal Muscle Male	skeletal muscle

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