Variant report

Variant	rs73027386
Chromosome Location	chr19:37926042-37926043
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10403307	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1236810	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1465434	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs256737	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs256739	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs256742	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs256743	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2617789	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs45483504	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62110388	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62110389	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62110390	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62110392	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62110395	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62110430	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62110431	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62110434	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7251097	0.92[EUR][1000 genomes]
rs73027379	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8108650	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8109709	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv833819	chr19:37899501-38051599	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37898000-37927000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr19:37898000-37956400	ZNF genes & repeats	Liver	Liver
3	chr19:37900200-37927000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr19:37903200-37927200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr19:37903200-37936600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr19:37903400-37936400	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
7	chr19:37906800-37927000	ZNF genes & repeats	Fetal Brain Female	brain
8	chr19:37906800-37936600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
9	chr19:37907600-37926600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
10	chr19:37910800-37956000	ZNF genes & repeats	Adipose Nuclei	Adipose
11	chr19:37911000-37926400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
12	chr19:37911000-37927000	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
13	chr19:37911200-37926600	ZNF genes & repeats	Brain Substantia Nigra	brain
14	chr19:37911200-37927000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
15	chr19:37911200-37927000	ZNF genes & repeats	Dnd41	blood
16	chr19:37911200-37936600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
17	chr19:37911200-37936600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
18	chr19:37911200-37954600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
19	chr19:37914800-37927000	ZNF genes & repeats	Brain Germinal Matrix	brain
20	chr19:37915000-37926600	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
21	chr19:37916400-37926400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
22	chr19:37916400-37926800	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
23	chr19:37916600-37927200	ZNF genes & repeats	Primary B cells from cord blood	blood
24	chr19:37917000-37926800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
25	chr19:37918200-37926400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
26	chr19:37920000-37927000	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
27	chr19:37920600-37927600	Weak transcription	Fetal Heart	heart
28	chr19:37921200-37927000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr19:37921600-37926400	ZNF genes & repeats	Fetal Lung	lung
30	chr19:37923000-37929000	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr19:37923200-37929000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr19:37923400-37929000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr19:37923400-37929200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr19:37924200-37926800	Weak transcription	Right Ventricle	heart
35	chr19:37924400-37926200	Strong transcription	Stomach Smooth Muscle	stomach
36	chr19:37924400-37932800	Weak transcription	Osteobl	bone
37	chr19:37924600-37927000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr19:37924800-37926400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr19:37924800-37926400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr19:37924800-37929000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr19:37925000-37926200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr19:37925000-37930400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr19:37925000-37943400	Weak transcription	HSMM	muscle
44	chr19:37925200-37929000	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr19:37925400-37926200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr19:37925400-37926400	ZNF genes & repeats	Aorta	Aorta
47	chr19:37925400-37931800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr19:37925600-37929200	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr19:37925800-37928800	Weak transcription	Ovary	ovary
50	chr19:37926000-37926800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain

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