Variant report

Variant	rs2568036
Chromosome Location	chr11:8923778-8923779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:8922103..8924731-chr11:8927642..8930308,2	K562	blood:
2	chr11:8922687..8924837-chr11:8924953..8926686,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10840149	1.00[AMR][1000 genomes]
rs10840152	0.90[AMR][1000 genomes]
rs1989143	0.80[AMR][1000 genomes]
rs2195812	0.90[AMR][1000 genomes]
rs2262323	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2568021	1.00[AMR][1000 genomes]
rs2568023	0.90[AMR][1000 genomes]
rs2568024	0.90[AMR][1000 genomes]
rs2568026	0.90[AMR][1000 genomes]
rs2568027	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2568030	0.90[AMR][1000 genomes]
rs2568033	0.86[AFR][1000 genomes]
rs2568041	0.87[AFR][1000 genomes]
rs2568072	1.00[AMR][1000 genomes]
rs2653561	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2653563	0.90[AMR][1000 genomes]
rs2653571	0.90[AMR][1000 genomes]
rs2653579	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2653583	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2653584	0.90[AMR][1000 genomes]
rs2653585	1.00[AMR][1000 genomes]
rs2653600	1.00[AMR][1000 genomes]
rs2653608	0.90[AMR][1000 genomes]
rs2742476	0.83[AMR][1000 genomes]
rs2742479	1.00[AMR][1000 genomes]
rs2742507	1.00[AMR][1000 genomes]
rs2742508	0.90[AMR][1000 genomes]
rs2742518	0.90[AMR][1000 genomes]
rs2742526	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2742527	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6416158	0.80[AMR][1000 genomes]
rs7104415	0.90[AMR][1000 genomes]
rs7119887	0.80[AMR][1000 genomes]
rs7395934	0.90[AMR][1000 genomes]
rs7396042	1.00[AMR][1000 genomes]
rs7396427	0.80[AMR][1000 genomes]
rs7932678	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv435923	chr11:8839325-9000602	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv832062	chr11:8849295-9009472	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2568036	TMEM9B	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8918000-8926000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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