Variant report

Variant	rs7932678
Chromosome Location	chr11:8908817-8908818
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10840149	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11042155	1.00[EUR][1000 genomes]
rs1989143	1.00[EUR][1000 genomes]
rs2195812	1.00[EUR][1000 genomes]
rs2256067	1.00[EUR][1000 genomes]
rs2262323	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2436178	1.00[EUR][1000 genomes]
rs2455603	0.86[YRI][hapmap]
rs2568021	0.85[YRI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2568023	1.00[EUR][1000 genomes]
rs2568024	1.00[EUR][1000 genomes]
rs2568026	1.00[EUR][1000 genomes]
rs2568027	0.89[YRI][hapmap];0.82[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2568030	1.00[EUR][1000 genomes]
rs2568036	0.92[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs2568041	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2568055	1.00[EUR][1000 genomes]
rs2568058	1.00[EUR][1000 genomes]
rs2568060	1.00[EUR][1000 genomes]
rs2568063	1.00[EUR][1000 genomes]
rs2568072	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2568083	1.00[EUR][1000 genomes]
rs2653561	0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2653563	1.00[EUR][1000 genomes]
rs2653571	1.00[EUR][1000 genomes]
rs2653583	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2653584	1.00[EUR][1000 genomes]
rs2653585	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2653588	1.00[CHD][hapmap];0.89[YRI][hapmap]
rs2653600	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2653608	1.00[EUR][1000 genomes]
rs2653614	1.00[EUR][1000 genomes]
rs2653615	1.00[EUR][1000 genomes]
rs2742469	1.00[EUR][1000 genomes]
rs2742479	0.80[YRI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2742482	1.00[EUR][1000 genomes]
rs2742507	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2742508	1.00[EUR][1000 genomes]
rs2742518	0.89[YRI][hapmap];1.00[EUR][1000 genomes]
rs2742526	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2742527	0.93[AFR][1000 genomes];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2742539	1.00[EUR][1000 genomes]
rs2742543	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2742551	1.00[EUR][1000 genomes]
rs6416158	1.00[EUR][1000 genomes]
rs6416159	1.00[EUR][1000 genomes]
rs7104415	1.00[EUR][1000 genomes]
rs73410028	1.00[EUR][1000 genomes]
rs73410031	1.00[EUR][1000 genomes]
rs73410040	1.00[EUR][1000 genomes]
rs7395934	1.00[EUR][1000 genomes]
rs7396042	0.86[YRI][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7396427	1.00[EUR][1000 genomes]
rs7479998	1.00[EUR][1000 genomes]
rs7936297	1.00[EUR][1000 genomes]
rs7950826	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv435923	chr11:8839325-9000602	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv832062	chr11:8849295-9009472	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
5	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8908200-8909000	Weak transcription	HSMMtube	muscle
2	chr11:8908200-8909400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links