Variant report

Variant	rs2742551
Chromosome Location	chr11:8877052-8877053
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10840149	1.00[EUR][1000 genomes]
rs11042155	1.00[EUR][1000 genomes]
rs1989143	1.00[EUR][1000 genomes]
rs2195812	1.00[EUR][1000 genomes]
rs2256067	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2262323	1.00[EUR][1000 genomes]
rs2436178	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2568021	1.00[EUR][1000 genomes]
rs2568023	1.00[EUR][1000 genomes]
rs2568024	1.00[EUR][1000 genomes]
rs2568026	1.00[EUR][1000 genomes]
rs2568027	1.00[EUR][1000 genomes]
rs2568028	0.87[AMR][1000 genomes]
rs2568030	1.00[EUR][1000 genomes]
rs2568041	1.00[EUR][1000 genomes]
rs2568055	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2568058	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2568060	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2568063	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2568072	1.00[EUR][1000 genomes]
rs2568083	1.00[EUR][1000 genomes]
rs2653561	1.00[EUR][1000 genomes]
rs2653563	1.00[EUR][1000 genomes]
rs2653571	1.00[EUR][1000 genomes]
rs2653583	1.00[EUR][1000 genomes]
rs2653584	1.00[EUR][1000 genomes]
rs2653585	1.00[EUR][1000 genomes]
rs2653600	1.00[EUR][1000 genomes]
rs2653608	1.00[EUR][1000 genomes]
rs2653614	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2653615	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2742469	1.00[EUR][1000 genomes]
rs2742479	1.00[EUR][1000 genomes]
rs2742482	1.00[EUR][1000 genomes]
rs2742507	1.00[EUR][1000 genomes]
rs2742508	1.00[EUR][1000 genomes]
rs2742518	1.00[EUR][1000 genomes]
rs2742526	1.00[EUR][1000 genomes]
rs2742527	1.00[EUR][1000 genomes]
rs2742539	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2742543	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6416158	1.00[EUR][1000 genomes]
rs6416159	1.00[EUR][1000 genomes]
rs7104415	1.00[EUR][1000 genomes]
rs73410028	1.00[EUR][1000 genomes]
rs73410031	1.00[EUR][1000 genomes]
rs73410040	1.00[EUR][1000 genomes]
rs7395934	1.00[EUR][1000 genomes]
rs7396042	1.00[EUR][1000 genomes]
rs7396427	1.00[EUR][1000 genomes]
rs7479998	1.00[EUR][1000 genomes]
rs7932678	1.00[EUR][1000 genomes]
rs7936297	1.00[EUR][1000 genomes]
rs7947427	1.00[AMR][1000 genomes]
rs7950826	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758256	chr11:8784813-9009573	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv2759803	chr11:8784813-9009573	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv435923	chr11:8839325-9000602	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
4	nsv832062	chr11:8849295-9009472	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8862200-8881200	Weak transcription	Hela-S3	cervix
2	chr11:8862400-8880000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr11:8862400-8880000	Weak transcription	Spleen	Spleen
4	chr11:8862400-8885000	Weak transcription	NHLF	lung
5	chr11:8862400-8888400	Weak transcription	Right Atrium	heart
6	chr11:8862600-8885200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:8863200-8890400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr11:8864000-8888000	Weak transcription	Fetal Intestine Small	intestine
9	chr11:8865800-8886000	Weak transcription	Fetal Stomach	stomach
10	chr11:8873200-8885000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:8874200-8880400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:8874600-8885000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:8874800-8879000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr11:8874800-8880600	Weak transcription	Placenta	Placenta
15	chr11:8875000-8879200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr11:8876200-8877400	Enhancers	Ovary	ovary
17	chr11:8876600-8877400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr11:8877000-8877200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr11:8877000-8877200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:8877000-8877200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr11:8877000-8877400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr11:8877000-8877400	Enhancers	Fetal Muscle Leg	muscle
23	chr11:8877000-8877400	Enhancers	Stomach Smooth Muscle	stomach

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