Variant report

Variant	rs73410031
Chromosome Location	chr11:9039195-9039196
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:8984709..8987187-chr11:9039122..9040993,2	MCF-7	breast:
2	chr11:9027002..9028615-chr11:9038847..9041783,2	K562	blood:
3	chr11:9038205..9041771-chr11:9047082..9049951,3	MCF-7	breast:
4	chr11:9033737..9035999-chr11:9038793..9040438,2	MCF-7	breast:
5	chr11:9037545..9039567-chr11:9040874..9042397,2	K562	blood:

Variant related genes	Relation type
ENSG00000175356	Chromatin interaction
ENSG00000254860	Chromatin interaction
ENSG00000175348	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10840149	1.00[EUR][1000 genomes]
rs11042155	1.00[EUR][1000 genomes]
rs1989143	1.00[EUR][1000 genomes]
rs2195812	1.00[EUR][1000 genomes]
rs2256067	1.00[EUR][1000 genomes]
rs2262323	1.00[EUR][1000 genomes]
rs2436178	1.00[EUR][1000 genomes]
rs2568021	1.00[EUR][1000 genomes]
rs2568023	1.00[EUR][1000 genomes]
rs2568024	1.00[EUR][1000 genomes]
rs2568026	1.00[EUR][1000 genomes]
rs2568027	1.00[EUR][1000 genomes]
rs2568030	1.00[EUR][1000 genomes]
rs2568041	1.00[EUR][1000 genomes]
rs2568055	1.00[EUR][1000 genomes]
rs2568058	1.00[EUR][1000 genomes]
rs2568060	1.00[EUR][1000 genomes]
rs2568063	1.00[EUR][1000 genomes]
rs2568072	1.00[EUR][1000 genomes]
rs2568083	1.00[EUR][1000 genomes]
rs2653561	1.00[EUR][1000 genomes]
rs2653563	1.00[EUR][1000 genomes]
rs2653571	1.00[EUR][1000 genomes]
rs2653583	1.00[EUR][1000 genomes]
rs2653584	1.00[EUR][1000 genomes]
rs2653585	1.00[EUR][1000 genomes]
rs2653600	1.00[EUR][1000 genomes]
rs2653608	1.00[EUR][1000 genomes]
rs2653614	1.00[EUR][1000 genomes]
rs2653615	1.00[EUR][1000 genomes]
rs2742469	1.00[EUR][1000 genomes]
rs2742479	1.00[EUR][1000 genomes]
rs2742482	1.00[EUR][1000 genomes]
rs2742507	1.00[EUR][1000 genomes]
rs2742508	1.00[EUR][1000 genomes]
rs2742518	1.00[EUR][1000 genomes]
rs2742526	1.00[EUR][1000 genomes]
rs2742527	1.00[EUR][1000 genomes]
rs2742539	1.00[EUR][1000 genomes]
rs2742543	1.00[EUR][1000 genomes]
rs2742551	1.00[EUR][1000 genomes]
rs6416158	1.00[EUR][1000 genomes]
rs6416159	1.00[EUR][1000 genomes]
rs7104415	1.00[EUR][1000 genomes]
rs73410028	1.00[EUR][1000 genomes]
rs73410040	1.00[EUR][1000 genomes]
rs7395934	1.00[EUR][1000 genomes]
rs7396042	1.00[EUR][1000 genomes]
rs7396427	1.00[EUR][1000 genomes]
rs7479998	1.00[EUR][1000 genomes]
rs7932678	1.00[EUR][1000 genomes]
rs7936297	1.00[EUR][1000 genomes]
rs7950826	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv896984	chr11:8988550-9090408	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv896985	chr11:9013002-9152463	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9034600-9041600	Weak transcription	Gastric	stomach
2	chr11:9035200-9051800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:9036400-9039800	Enhancers	Fetal Muscle Leg	muscle
4	chr11:9036600-9048400	Weak transcription	Pancreas	Pancrea
5	chr11:9037000-9040000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:9037200-9039600	Enhancers	Fetal Stomach	stomach
7	chr11:9037200-9040000	Enhancers	Adipose Nuclei	Adipose
8	chr11:9037400-9039200	Enhancers	Stomach Smooth Muscle	stomach
9	chr11:9037400-9039800	Enhancers	Left Ventricle	heart
10	chr11:9037400-9039800	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr11:9037400-9040000	Enhancers	Psoas Muscle	Psoas
12	chr11:9037400-9040000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr11:9037600-9039200	Weak transcription	Osteobl	bone
14	chr11:9037600-9039400	Weak transcription	HSMM	muscle
15	chr11:9037600-9039600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr11:9037600-9039600	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr11:9037600-9039600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:9037600-9041600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:9037600-9042200	Weak transcription	Right Ventricle	heart
20	chr11:9037600-9045000	Weak transcription	Fetal Brain Male	brain
21	chr11:9037800-9039200	Enhancers	Primary T cells from cord blood	blood
22	chr11:9037800-9039600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr11:9038000-9039600	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr11:9038000-9039800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr11:9038000-9039800	Enhancers	Placenta	Placenta
26	chr11:9038200-9039400	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr11:9038200-9039400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr11:9038200-9039600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
29	chr11:9038200-9039600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr11:9038200-9039600	Enhancers	HUVEC	blood vessel
31	chr11:9038200-9039800	Enhancers	GM12878-XiMat	blood
32	chr11:9038200-9041400	Weak transcription	Brain Hippocampus Middle	brain
33	chr11:9038200-9045200	Weak transcription	HSMMtube	muscle
34	chr11:9038200-9064000	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr11:9038400-9039200	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr11:9038400-9039600	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr11:9038400-9039800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr11:9038400-9040000	Enhancers	Primary hematopoietic stem cells	blood
39	chr11:9038400-9040400	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr11:9038600-9039200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
41	chr11:9038600-9039200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr11:9038600-9039400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr11:9038600-9039600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr11:9038600-9039800	Enhancers	NHDF-Ad	bronchial
45	chr11:9038600-9041800	Weak transcription	Colon Smooth Muscle	Colon
46	chr11:9038600-9047000	Weak transcription	Brain Substantia Nigra	brain
47	chr11:9038800-9039200	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr11:9038800-9039200	Enhancers	Fetal Thymus	thymus
49	chr11:9038800-9039200	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr11:9038800-9039200	Enhancers	Dnd41	blood

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