Variant report

Variant	rs6416158
Chromosome Location	chr11:9013584-9013585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:9010207..9011708-chr11:9012903..9015577,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10840149	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10840152	0.90[AMR][1000 genomes]
rs11042155	1.00[EUR][1000 genomes]
rs1989143	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2195812	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2256067	1.00[EUR][1000 genomes]
rs2262323	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2436178	1.00[EUR][1000 genomes]
rs2568021	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2568023	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2568024	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2568026	1.00[EUR][1000 genomes]
rs2568027	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2568030	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2568036	0.80[AMR][1000 genomes]
rs2568041	1.00[EUR][1000 genomes]
rs2568046	0.81[AFR][1000 genomes]
rs2568055	1.00[EUR][1000 genomes]
rs2568058	1.00[EUR][1000 genomes]
rs2568060	1.00[EUR][1000 genomes]
rs2568063	1.00[EUR][1000 genomes]
rs2568072	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2568083	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2653561	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2653563	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2653571	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2653583	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2653584	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2653585	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2653592	0.85[AFR][1000 genomes]
rs2653595	0.83[AFR][1000 genomes]
rs2653600	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2653608	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2653614	1.00[EUR][1000 genomes]
rs2653615	1.00[EUR][1000 genomes]
rs2742469	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2742479	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2742482	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2742507	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2742508	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2742518	1.00[EUR][1000 genomes]
rs2742526	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2742527	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2742539	1.00[EUR][1000 genomes]
rs2742543	1.00[EUR][1000 genomes]
rs2742551	1.00[EUR][1000 genomes]
rs6416159	1.00[EUR][1000 genomes]
rs7104415	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7119887	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73410028	1.00[EUR][1000 genomes]
rs73410031	1.00[EUR][1000 genomes]
rs73410040	1.00[EUR][1000 genomes]
rs7394940	0.80[AFR][1000 genomes]
rs7395934	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7396042	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7396427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7479998	1.00[EUR][1000 genomes]
rs7932678	1.00[EUR][1000 genomes]
rs7936297	1.00[EUR][1000 genomes]
rs7950826	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413845	chr11:8887279-9285127	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv896984	chr11:8988550-9090408	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv33264	chr11:9007612-9311131	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv896985	chr11:9013002-9152463	Weak transcription Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8989600-9019600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr11:8991800-9015600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:9001800-9015200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:9011000-9023200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:9011800-9023000	Weak transcription	NHDF-Ad	bronchial
6	chr11:9013200-9013800	Enhancers	K562	blood
7	chr11:9013200-9014000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:9013400-9013600	Enhancers	Fetal Lung	lung

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