Variant report

Variant	rs2569952
Chromosome Location	chr3:144148499-144148500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1102117	1.00[ASN][1000 genomes]
rs1102119	1.00[ASN][1000 genomes]
rs11920230	1.00[ASN][1000 genomes]
rs197834	1.00[ASN][1000 genomes]
rs197835	1.00[ASN][1000 genomes]
rs197837	1.00[ASN][1000 genomes]
rs197839	1.00[ASN][1000 genomes]
rs2375082	1.00[ASN][1000 genomes]
rs58552343	1.00[ASN][1000 genomes]
rs6802569	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs708477	1.00[ASN][1000 genomes]
rs708478	1.00[ASN][1000 genomes]
rs7614960	1.00[ASN][1000 genomes]
rs856783	1.00[ASN][1000 genomes]
rs856784	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs856785	1.00[ASN][1000 genomes]
rs856791	1.00[ASN][1000 genomes]
rs856796	1.00[ASN][1000 genomes]
rs856798	1.00[ASN][1000 genomes]
rs856802	1.00[ASN][1000 genomes]
rs856803	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1011685	chr3:143959237-144218424	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv536751	chr3:143959237-144218424	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv591929	chr3:144123401-144188561	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1012058	chr3:144139713-144183108	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144148400-144148800	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr3:144148400-144148800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr3:144148400-144149000	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr3:144148400-144149000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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