Variant report

Variant	rs6802569
Chromosome Location	chr3:144028595-144028596
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:143689712..143692723-chr3:144026505..144028595,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000181744	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1102117	1.00[ASN][1000 genomes]
rs1102119	1.00[ASN][1000 genomes]
rs11914375	1.00[EUR][1000 genomes]
rs11920230	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11921356	1.00[EUR][1000 genomes]
rs197834	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs197835	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs197837	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs197839	1.00[ASN][1000 genomes]
rs2375082	1.00[ASN][1000 genomes]
rs2569952	1.00[ASN][1000 genomes]
rs58552343	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs60301301	0.84[AFR][1000 genomes]
rs6770469	1.00[EUR][1000 genomes]
rs708477	1.00[ASN][1000 genomes]
rs708478	1.00[ASN][1000 genomes]
rs73873213	0.83[AFR][1000 genomes]
rs73873225	0.84[AFR][1000 genomes]
rs7614960	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs856783	1.00[ASN][1000 genomes]
rs856784	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs856785	1.00[ASN][1000 genomes]
rs856791	1.00[ASN][1000 genomes]
rs856796	1.00[ASN][1000 genomes]
rs856798	1.00[ASN][1000 genomes]
rs856802	1.00[ASN][1000 genomes]
rs856803	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010117	chr3:143750590-144093775	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv536748	chr3:143750590-144093775	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1002032	chr3:143848755-144065468	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv877570	chr3:143853149-144123401	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv591926	chr3:143873901-144058395	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1011685	chr3:143959237-144218424	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv536751	chr3:143959237-144218424	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv980023	chr3:143981697-144036271	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv591927	chr3:143998527-144054686	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144028000-144034800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:144028400-144028800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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