Variant report

Variant	rs6770469
Chromosome Location	chr3:144030037-144030038
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:144026496..144028084-chr3:144029746..144032575,2	MCF-7	breast:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs11914375	1.00[EUR][1000 genomes]
rs11920230	1.00[EUR][1000 genomes]
rs11921356	1.00[EUR][1000 genomes]
rs12629763	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12630075	0.90[ASN][1000 genomes]
rs12632207	0.93[ASN][1000 genomes]
rs12632605	0.96[ASN][1000 genomes]
rs12633232	0.90[ASN][1000 genomes]
rs12633585	0.90[ASN][1000 genomes]
rs12634524	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12634939	0.93[ASN][1000 genomes]
rs12636393	0.93[ASN][1000 genomes]
rs12637613	0.93[ASN][1000 genomes]
rs1503324	0.93[ASN][1000 genomes]
rs1608999	1.00[CHB][hapmap]
rs183838	0.82[CHB][hapmap]
rs197834	0.82[EUR][1000 genomes]
rs197835	0.82[EUR][1000 genomes]
rs197837	0.82[EUR][1000 genomes]
rs41401847	0.93[ASN][1000 genomes]
rs41430844	0.93[ASN][1000 genomes]
rs57444904	0.93[ASN][1000 genomes]
rs61146072	0.93[ASN][1000 genomes]
rs61200466	0.93[ASN][1000 genomes]
rs6802569	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs72999937	0.96[ASN][1000 genomes]
rs72999962	0.93[ASN][1000 genomes]
rs72999980	0.93[ASN][1000 genomes]
rs72999982	0.93[ASN][1000 genomes]
rs72999985	0.93[ASN][1000 genomes]
rs72999988	0.93[ASN][1000 genomes]
rs72999989	0.86[ASN][1000 genomes]
rs72999991	0.93[ASN][1000 genomes]
rs73000000	0.93[ASN][1000 genomes]
rs73000002	0.93[ASN][1000 genomes]
rs73001805	0.93[ASN][1000 genomes]
rs7614960	1.00[EUR][1000 genomes]
rs856784	1.00[CEU][hapmap]
rs9835986	1.00[CHB][hapmap]
rs9878391	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010117	chr3:143750590-144093775	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv536748	chr3:143750590-144093775	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1002032	chr3:143848755-144065468	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv877570	chr3:143853149-144123401	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv591926	chr3:143873901-144058395	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1011685	chr3:143959237-144218424	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv536751	chr3:143959237-144218424	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv980023	chr3:143981697-144036271	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv591927	chr3:143998527-144054686	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144028000-144034800	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links