Variant report

Variant	rs12634524
Chromosome Location	chr3:144025958-144025959
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:53342265..53345092-chr3:144025098..144026936,2	MCF-7	breast:
2	chr3:143690773..143693147-chr3:144024947..144027838,2	K562	blood:

Variant related genes	Relation type
ENSG00000111057	Chromatin interaction
ENSG00000170421	Chromatin interaction
ENSG00000181744	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11924344	1.00[AMR][1000 genomes]
rs12629763	1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs12630075	0.86[ASN][1000 genomes]
rs12632207	0.89[ASN][1000 genomes]
rs12632605	0.86[ASN][1000 genomes]
rs12633232	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12633585	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12634939	0.89[ASN][1000 genomes]
rs12636393	0.89[ASN][1000 genomes]
rs12637613	0.89[ASN][1000 genomes]
rs1503324	0.89[ASN][1000 genomes]
rs41401847	0.89[ASN][1000 genomes]
rs41430844	0.89[ASN][1000 genomes]
rs57444904	0.89[ASN][1000 genomes]
rs61146072	0.89[ASN][1000 genomes]
rs61200466	0.89[ASN][1000 genomes]
rs6770469	0.90[ASN][1000 genomes]
rs72999937	0.86[ASN][1000 genomes]
rs72999962	0.89[ASN][1000 genomes]
rs72999980	0.89[ASN][1000 genomes]
rs72999982	0.89[ASN][1000 genomes]
rs72999985	0.89[ASN][1000 genomes]
rs72999988	0.89[ASN][1000 genomes]
rs72999989	0.83[ASN][1000 genomes]
rs72999991	0.89[ASN][1000 genomes]
rs73000000	0.89[ASN][1000 genomes]
rs73000002	0.89[ASN][1000 genomes]
rs73001805	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010117	chr3:143750590-144093775	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv536748	chr3:143750590-144093775	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1002032	chr3:143848755-144065468	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv877570	chr3:143853149-144123401	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv591926	chr3:143873901-144058395	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1011685	chr3:143959237-144218424	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv536751	chr3:143959237-144218424	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv980023	chr3:143981697-144036271	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	nsv591927	chr3:143998527-144054686	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144025800-144028000	Enhancers	Dnd41	blood

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