Variant report

Variant	rs73000000
Chromosome Location	chr3:144062955-144062956
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:144060304..144063071-chr3:144063118..144065175,2	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12486580	0.81[AFR][1000 genomes]
rs12629763	1.00[ASN][1000 genomes]
rs12630075	0.96[ASN][1000 genomes]
rs12632207	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12632605	0.96[ASN][1000 genomes]
rs12633232	0.89[ASN][1000 genomes]
rs12633585	0.89[ASN][1000 genomes]
rs12634524	0.89[ASN][1000 genomes]
rs12634939	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12636393	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12637613	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1503324	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41401847	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41430844	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57444904	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59921777	0.81[AFR][1000 genomes]
rs61146072	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61200466	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6770469	0.93[ASN][1000 genomes]
rs72999924	0.81[AFR][1000 genomes]
rs72999937	0.96[ASN][1000 genomes]
rs72999962	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72999980	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72999982	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72999985	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72999988	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72999989	0.93[ASN][1000 genomes]
rs72999991	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73000002	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73001805	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010117	chr3:143750590-144093775	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv536748	chr3:143750590-144093775	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1002032	chr3:143848755-144065468	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv877570	chr3:143853149-144123401	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1011685	chr3:143959237-144218424	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv536751	chr3:143959237-144218424	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv822274	chr3:144059205-144064282	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144061600-144063400	Enhancers	Fetal Lung	lung
2	chr3:144062000-144063000	Enhancers	Fetal Intestine Small	intestine
3	chr3:144062200-144063000	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr3:144062200-144063000	Enhancers	Liver	Liver
5	chr3:144062400-144063200	Enhancers	Ovary	ovary
6	chr3:144062600-144063600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr3:144062600-144065600	Enhancers	Dnd41	blood
8	chr3:144062800-144064400	Enhancers	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links