Variant report

Variant	rs12632605
Chromosome Location	chr3:144042999-144043000
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12629763	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs12630075	0.93[ASN][1000 genomes]
rs12632207	0.96[ASN][1000 genomes]
rs12633232	0.86[ASN][1000 genomes]
rs12633585	0.86[ASN][1000 genomes]
rs12634524	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12634939	0.96[ASN][1000 genomes]
rs12636393	0.96[ASN][1000 genomes]
rs12637613	0.96[ASN][1000 genomes]
rs1503324	0.96[ASN][1000 genomes]
rs1608999	1.00[CHB][hapmap]
rs183838	0.82[CHB][hapmap]
rs41401847	0.96[ASN][1000 genomes]
rs41430844	0.96[ASN][1000 genomes]
rs57444904	0.96[ASN][1000 genomes]
rs58552343	1.00[EUR][1000 genomes]
rs61146072	0.96[ASN][1000 genomes]
rs61200466	0.96[ASN][1000 genomes]
rs6770469	0.96[ASN][1000 genomes]
rs708477	0.82[EUR][1000 genomes]
rs72999937	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72999962	0.96[ASN][1000 genomes]
rs72999980	0.96[ASN][1000 genomes]
rs72999982	0.96[ASN][1000 genomes]
rs72999985	0.96[ASN][1000 genomes]
rs72999988	0.96[ASN][1000 genomes]
rs72999989	0.90[ASN][1000 genomes]
rs72999991	0.96[ASN][1000 genomes]
rs73000000	0.96[ASN][1000 genomes]
rs73000002	0.96[ASN][1000 genomes]
rs73001805	0.96[ASN][1000 genomes]
rs856795	0.82[EUR][1000 genomes]
rs9835986	1.00[CHB][hapmap]
rs9878391	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010117	chr3:143750590-144093775	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv536748	chr3:143750590-144093775	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1002032	chr3:143848755-144065468	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv877570	chr3:143853149-144123401	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv591926	chr3:143873901-144058395	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1011685	chr3:143959237-144218424	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv536751	chr3:143959237-144218424	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv591927	chr3:143998527-144054686	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144041800-144044800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:144042000-144043600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:144042200-144043400	Enhancers	Fetal Intestine Small	intestine
4	chr3:144042200-144043600	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr3:144042400-144043000	Enhancers	Esophagus	oesophagus
6	chr3:144042600-144043000	Enhancers	Fetal Intestine Large	intestine
7	chr3:144042600-144043400	Enhancers	Gastric	stomach
8	chr3:144042600-144043400	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr3:144042800-144043400	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr3:144042800-144043400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:144042800-144043400	Enhancers	Stomach Mucosa	stomach

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