Variant report

Variant	rs11920230
Chromosome Location	chr3:144061535-144061536
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:144060304..144063071-chr3:144063118..144065175,2	K562	blood:
2	chr3:144058521..144060578-chr3:144061282..144062889,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1102117	1.00[ASN][1000 genomes]
rs1102119	1.00[ASN][1000 genomes]
rs11914375	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11921356	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs197834	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs197835	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs197837	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs197839	1.00[ASN][1000 genomes]
rs2375082	1.00[ASN][1000 genomes]
rs2569952	1.00[ASN][1000 genomes]
rs58552343	1.00[ASN][1000 genomes]
rs6770469	1.00[EUR][1000 genomes]
rs6802569	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs708477	1.00[ASN][1000 genomes]
rs708478	1.00[ASN][1000 genomes]
rs7614960	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs856783	1.00[ASN][1000 genomes]
rs856784	1.00[ASN][1000 genomes]
rs856785	1.00[ASN][1000 genomes]
rs856791	1.00[ASN][1000 genomes]
rs856796	1.00[ASN][1000 genomes]
rs856798	1.00[ASN][1000 genomes]
rs856802	1.00[ASN][1000 genomes]
rs856803	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010117	chr3:143750590-144093775	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv536748	chr3:143750590-144093775	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1002032	chr3:143848755-144065468	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv877570	chr3:143853149-144123401	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1011685	chr3:143959237-144218424	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv536751	chr3:143959237-144218424	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv822274	chr3:144059205-144064282	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144060600-144061600	Weak transcription	Fetal Heart	heart
2	chr3:144060600-144061600	Weak transcription	Fetal Lung	lung
3	chr3:144060600-144061800	Weak transcription	Ovary	ovary
4	chr3:144060800-144061800	Weak transcription	Liver	Liver
5	chr3:144060800-144062000	Weak transcription	Fetal Intestine Small	intestine
6	chr3:144060800-144062600	Weak transcription	Dnd41	blood
7	chr3:144061200-144062200	Weak transcription	Fetal Intestine Large	intestine

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