Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1444601	0.91[GIH][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap]
rs1550742	0.85[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.81[EUR][1000 genomes]
rs1867502	1.00[ASN][1000 genomes]
rs2589274	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2589275	0.94[ASN][1000 genomes]
rs2718809	0.97[ASN][1000 genomes]
rs2718811	0.91[ASN][1000 genomes]
rs2718812	0.96[ASN][1000 genomes]
rs2718813	0.96[ASN][1000 genomes]
rs2718814	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2718815	0.94[ASN][1000 genomes]
rs2953740	0.96[ASN][1000 genomes]
rs3192149	0.80[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35787332	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4359807	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4557155	0.95[ASN][1000 genomes]
rs4854741	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7626210	0.94[ASN][1000 genomes]
rs7628607	0.92[ASN][1000 genomes]
rs7632134	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516081	chr3:133399702-133412094	Weak transcription Enhancers ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases
2	nsv979783	chr3:133408825-133413260	Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2589267	NCK1	cis	cerebellum	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133407200-133410200	Weak transcription	HepG2	liver
2	chr3:133409600-133410400	Enhancers	Pancreas	Pancrea

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