Variant report

Variant	rs2589514
Chromosome Location	chr4:86940532-86940533
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86932598..86934396-chr4:86939558..86941461,2	MCF-7	breast:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10001162	0.91[ASN][1000 genomes]
rs10009993	0.89[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs10028075	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1010778	1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs10856856	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs11097091	0.91[ASN][1000 genomes]
rs11097092	0.91[ASN][1000 genomes]
rs11934691	0.98[ASN][1000 genomes]
rs12502902	0.90[ASN][1000 genomes]
rs12644938	1.00[ASN][1000 genomes]
rs12644947	0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs1436521	0.91[ASN][1000 genomes]
rs1436527	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs2589506	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2589515	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2589516	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3775181	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3775183	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3775187	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs4133139	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4364253	0.91[ASN][1000 genomes]
rs4482754	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4487330	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4501213	0.90[ASN][1000 genomes]
rs4640664	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs6531896	1.00[ASN][1000 genomes]
rs6810413	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs7692676	1.00[ASN][1000 genomes]
rs9996208	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86916800-86985400	Weak transcription	Ovary	ovary
2	chr4:86917000-86954000	Weak transcription	Pancreas	Pancrea
3	chr4:86919400-86941200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr4:86928600-86953400	Weak transcription	Fetal Muscle Leg	muscle
5	chr4:86932800-86953800	Weak transcription	Fetal Lung	lung
6	chr4:86934200-86942200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr4:86934200-86953400	Weak transcription	Aorta	Aorta
8	chr4:86935200-86942200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:86935200-86949200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:86936000-86948000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr4:86936000-86975600	Weak transcription	Brain Germinal Matrix	brain
12	chr4:86936400-86954600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr4:86936400-86990600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr4:86936600-86948000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr4:86936800-86953600	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr4:86938200-86954200	Weak transcription	Fetal Kidney	kidney
17	chr4:86938400-86953400	Weak transcription	Brain Hippocampus Middle	brain
18	chr4:86938600-86945800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr4:86938600-86949000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr4:86938600-86953400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr4:86938600-86953600	Weak transcription	Brain Angular Gyrus	brain
22	chr4:86938600-86954000	Weak transcription	Brain Cingulate Gyrus	brain
23	chr4:86938600-86957800	Weak transcription	Fetal Brain Female	brain
24	chr4:86939200-86953800	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links