Variant report

Variant	rs11097091
Chromosome Location	chr4:87004521-87004522
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86996065..86997848-chr4:87003738..87005825,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10001162	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10009993	0.99[ASN][1000 genomes]
rs10023731	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10028075	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1010778	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10856856	0.89[ASN][1000 genomes]
rs11097092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11934691	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12502902	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12502934	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12512583	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12644938	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12644947	0.97[ASN][1000 genomes]
rs13103374	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13112959	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1436521	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1436527	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1469869	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2118044	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2589514	0.91[ASN][1000 genomes]
rs3775181	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3775183	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3775187	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4133139	0.99[ASN][1000 genomes]
rs4364253	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4482754	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4487330	0.93[CEU][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4501213	1.00[CEU][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6531896	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6810413	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6840318	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7692676	0.91[ASN][1000 genomes]
rs9884770	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9995879	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9996208	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003585	chr4:86957967-87250436	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv594761	chr4:86976413-87018488	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv2754254	chr4:86979147-87108510	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879521	chr4:86979927-87165758	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:87002600-87005800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr4:87003200-87005600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr4:87003600-87004600	ZNF genes & repeats	Brain Cingulate Gyrus	brain
4	chr4:87003600-87005000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
5	chr4:87003600-87005400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:87003600-87005400	ZNF genes & repeats	Fetal Kidney	kidney
7	chr4:87003600-87005400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
8	chr4:87003600-87005600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:87003800-87005000	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr4:87003800-87005000	ZNF genes & repeats	Brain Angular Gyrus	brain
11	chr4:87003800-87005200	ZNF genes & repeats	Adipose Nuclei	Adipose
12	chr4:87003800-87005200	ZNF genes & repeats	Brain Anterior Caudate	brain
13	chr4:87003800-87005200	ZNF genes & repeats	Brain Hippocampus Middle	brain
14	chr4:87003800-87005200	ZNF genes & repeats	Fetal Lung	lung
15	chr4:87003800-87005400	ZNF genes & repeats	Brain Germinal Matrix	brain
16	chr4:87003800-87005400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
17	chr4:87003800-87005600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
18	chr4:87004000-87005200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr4:87004000-87005200	ZNF genes & repeats	Ovary	ovary
20	chr4:87004000-87005400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
21	chr4:87004000-87005400	ZNF genes & repeats	Aorta	Aorta
22	chr4:87004000-87005400	ZNF genes & repeats	Fetal Stomach	stomach
23	chr4:87004000-87005600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:87004000-87028400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr4:87004200-87005400	ZNF genes & repeats	Fetal Intestine Small	intestine
26	chr4:87004200-87006400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr4:87004400-87004600	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
28	chr4:87004400-87005000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
29	chr4:87004400-87005200	ZNF genes & repeats	Left Ventricle	heart
30	chr4:87004400-87005400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr4:87004400-87005400	ZNF genes & repeats	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links