Variant report

Variant	rs6531896
Chromosome Location	chr4:86949017-86949018
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10001162	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10009993	0.90[ASN][1000 genomes]
rs10023731	0.90[EUR][1000 genomes]
rs10028075	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1010778	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10856856	0.94[ASN][1000 genomes]
rs11097091	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11097092	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11934691	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12502902	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12502934	0.86[EUR][1000 genomes]
rs12512583	0.89[EUR][1000 genomes]
rs12644938	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12644947	0.88[ASN][1000 genomes]
rs13103374	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13112959	0.89[EUR][1000 genomes]
rs1436521	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1436527	0.98[ASN][1000 genomes]
rs1469869	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2118044	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2589514	1.00[ASN][1000 genomes]
rs3775181	0.96[ASN][1000 genomes]
rs3775183	0.96[ASN][1000 genomes]
rs3775187	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4133139	0.90[ASN][1000 genomes]
rs4364253	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4482754	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4487330	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4501213	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4640664	0.85[ASN][1000 genomes]
rs6810413	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6840318	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7692676	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9884770	0.86[EUR][1000 genomes]
rs9995879	0.89[EUR][1000 genomes]
rs9996208	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009622	chr4:86893536-87119153	Strong transcription Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86916800-86985400	Weak transcription	Ovary	ovary
2	chr4:86917000-86954000	Weak transcription	Pancreas	Pancrea
3	chr4:86928600-86953400	Weak transcription	Fetal Muscle Leg	muscle
4	chr4:86932800-86953800	Weak transcription	Fetal Lung	lung
5	chr4:86934200-86953400	Weak transcription	Aorta	Aorta
6	chr4:86935200-86949200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:86936000-86975600	Weak transcription	Brain Germinal Matrix	brain
8	chr4:86936400-86954600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr4:86936400-86990600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr4:86936800-86953600	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr4:86938200-86954200	Weak transcription	Fetal Kidney	kidney
12	chr4:86938400-86953400	Weak transcription	Brain Hippocampus Middle	brain
13	chr4:86938600-86953400	Weak transcription	Stomach Smooth Muscle	stomach
14	chr4:86938600-86953600	Weak transcription	Brain Angular Gyrus	brain
15	chr4:86938600-86954000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr4:86938600-86957800	Weak transcription	Fetal Brain Female	brain
17	chr4:86939200-86953800	Weak transcription	Fetal Stomach	stomach
18	chr4:86944600-86954200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr4:86944600-86963000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:86945400-86963200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr4:86946400-86954000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr4:86946600-86953200	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr4:86948000-86949200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr4:86948200-86953800	Weak transcription	Lung	lung
25	chr4:86948200-86966600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr4:86948600-86953400	Weak transcription	Left Ventricle	heart
27	chr4:86949000-86949400	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain

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