Variant report

Variant	rs2589744
Chromosome Location	chr8:35391691-35391692
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10099855	0.83[ASN][1000 genomes]
rs10102863	0.81[ASN][1000 genomes]
rs10112860	0.82[ASN][1000 genomes]
rs10216851	0.82[ASN][1000 genomes]
rs12334629	0.82[ASN][1000 genomes]
rs12541423	0.85[CHB][hapmap];0.81[ASN][1000 genomes]
rs12544701	0.82[ASN][1000 genomes]
rs12546560	0.81[ASN][1000 genomes]
rs12546786	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs12547584	0.81[ASN][1000 genomes]
rs12550037	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs13250198	0.81[ASN][1000 genomes]
rs1439151	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1439157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1439159	0.81[ASN][1000 genomes]
rs16884109	0.81[ASN][1000 genomes]
rs1821958	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1898829	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1992251	0.81[ASN][1000 genomes]
rs1992252	0.81[ASN][1000 genomes]
rs2243786	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2579881	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2579885	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2579886	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2579889	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2579890	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2579892	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2579896	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2589333	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2589347	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2589348	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2589749	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2589750	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2589760	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2589764	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2921109	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2921219	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35827990	0.83[ASN][1000 genomes]
rs41409549	0.83[ASN][1000 genomes]
rs4739306	0.81[ASN][1000 genomes]
rs6980691	0.81[ASN][1000 genomes]
rs6988474	0.85[CHB][hapmap];0.83[ASN][1000 genomes]
rs6991528	0.82[ASN][1000 genomes]
rs6997313	0.81[ASN][1000 genomes]
rs7818666	0.81[ASN][1000 genomes]
rs7845667	0.81[ASN][1000 genomes]
rs873893	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs983271	0.81[ASN][1000 genomes]
rs983272	0.81[ASN][1000 genomes]
rs983273	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv520421	chr8:35155517-35479468	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1024397	chr8:35296922-35424277	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35359800-35397200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:35391200-35391800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
3	chr8:35391200-35391800	Active TSS	HUES48 Cell Line	embryonic stem cell
4	chr8:35391200-35392000	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr8:35391600-35391800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr8:35391600-35392000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:35391600-35392000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr8:35391600-35392200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr8:35391600-35397000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr8:35391600-35401400	Weak transcription	H9 Cell Line	embryonic stem cell

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