Variant report

Variant	rs2589760
Chromosome Location	chr8:35419308-35419309
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10099855	0.81[ASN][1000 genomes]
rs10112860	0.80[ASN][1000 genomes]
rs10216851	0.80[ASN][1000 genomes]
rs12334629	0.80[ASN][1000 genomes]
rs12541423	0.83[ASN][1000 genomes]
rs12544701	0.80[ASN][1000 genomes]
rs12546560	0.83[ASN][1000 genomes]
rs12546786	0.81[ASN][1000 genomes]
rs12550037	0.81[ASN][1000 genomes]
rs13250198	0.83[ASN][1000 genomes]
rs1439151	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1439157	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16884109	0.83[ASN][1000 genomes]
rs1821958	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1898829	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1992251	0.83[ASN][1000 genomes]
rs1992252	0.83[ASN][1000 genomes]
rs2243786	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2579881	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2579885	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2579886	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2579889	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2579890	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2579892	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2579896	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2589333	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2589347	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2589348	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2589744	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2589749	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2589750	0.88[EUR][1000 genomes]
rs2589764	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2921109	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2921219	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35827990	0.81[ASN][1000 genomes]
rs41409549	0.81[ASN][1000 genomes]
rs4739306	0.83[ASN][1000 genomes]
rs6980691	0.83[ASN][1000 genomes]
rs6988474	0.81[ASN][1000 genomes]
rs6991528	0.80[ASN][1000 genomes]
rs6997313	0.83[ASN][1000 genomes]
rs7818666	0.83[ASN][1000 genomes]
rs7845667	0.83[ASN][1000 genomes]
rs873893	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs983271	0.83[ASN][1000 genomes]
rs983272	0.83[ASN][1000 genomes]
rs983273	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017085	chr8:34742896-35594241	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv539546	chr8:34742896-35594241	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv520421	chr8:35155517-35479468	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1024397	chr8:35296922-35424277	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv533420	chr8:35358115-36227536	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	esv1799001	chr8:35414987-35422131	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
7	esv3399250	chr8:35418810-35422308	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:35414800-35424200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr8:35415000-35423400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr8:35415000-35431000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:35418800-35423000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr8:35418800-35423200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr8:35419000-35421600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr8:35419000-35423200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr8:35419000-35423400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr8:35419000-35430200	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr8:35419000-35439400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr8:35419000-35439600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr8:35419200-35423000	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr8:35419200-35427600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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