Variant report
Variant | rs2593414 |
---|---|
Chromosome Location | chr9:17435383-17435384 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10046851 | 0.81[CEU][hapmap] |
rs10114662 | 0.82[CEU][hapmap] |
rs10114688 | 0.82[CEU][hapmap] |
rs10114730 | 0.81[CEU][hapmap] |
rs10119370 | 0.82[CEU][hapmap] |
rs10121841 | 0.82[CEU][hapmap] |
rs10123715 | 0.82[CEU][hapmap] |
rs10124487 | 0.82[CEU][hapmap] |
rs10738474 | 0.82[CEU][hapmap] |
rs10756867 | 0.82[CEU][hapmap] |
rs10756869 | 0.82[CEU][hapmap] |
rs10756874 | 0.82[CEU][hapmap] |
rs10756875 | 0.82[CEU][hapmap] |
rs10756878 | 0.82[CEU][hapmap] |
rs10810761 | 0.80[CEU][hapmap] |
rs10810764 | 0.82[CEU][hapmap] |
rs10810765 | 0.81[CEU][hapmap] |
rs10810773 | 0.82[CEU][hapmap] |
rs10810782 | 0.92[CEU][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes] |
rs10810786 | 0.85[ASN][1000 genomes] |
rs10810788 | 0.81[CHB][hapmap];0.86[JPT][hapmap] |
rs10962988 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[GIH][hapmap];0.88[JPT][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap] |
rs10963063 | 0.82[CEU][hapmap] |
rs10963099 | 0.81[CHB][hapmap];0.87[JPT][hapmap] |
rs12339564 | 0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs12345267 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.88[GIH][hapmap];0.94[JPT][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes] |
rs12379104 | 0.89[CEU][hapmap] |
rs1372697 | 0.81[CHB][hapmap] |
rs1372699 | 0.81[CHB][hapmap];0.88[JPT][hapmap] |
rs1372702 | 0.82[CEU][hapmap] |
rs1372705 | 0.81[CHB][hapmap];0.88[JPT][hapmap] |
rs1442514 | 0.82[JPT][hapmap] |
rs1442533 | 0.89[CEU][hapmap];0.82[TSI][hapmap];0.85[EUR][1000 genomes] |
rs1582031 | 1.00[CEU][hapmap] |
rs1583987 | 0.81[CEU][hapmap] |
rs1591138 | 1.00[CEU][hapmap] |
rs1596193 | 0.82[CEU][hapmap] |
rs1889114 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs1953105 | 1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2044119 | 0.82[CEU][hapmap] |
rs2099858 | 0.82[CEU][hapmap] |
rs2225598 | 0.82[CEU][hapmap] |
rs2584535 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2584536 | 0.82[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs2584537 | 0.94[ASN][1000 genomes] |
rs2584547 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs2584553 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2584554 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2593382 | 0.81[CEU][hapmap];0.85[CHB][hapmap];0.94[CHD][hapmap];0.93[JPT][hapmap];0.83[MEX][hapmap];0.88[ASN][1000 genomes] |
rs2593412 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs2593415 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs2779773 | 0.82[CEU][hapmap] |
rs2779775 | 0.82[CEU][hapmap] |
rs2780197 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2780198 | 1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.95[EUR][1000 genomes] |
rs2780199 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs2780201 | 0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2780209 | 0.90[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2780212 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes] |
rs2990670 | 0.82[CEU][hapmap] |
rs3780258 | 0.82[CEU][hapmap] |
rs3824392 | 0.82[CEU][hapmap] |
rs4246136 | 0.82[CEU][hapmap] |
rs4272484 | 0.82[CEU][hapmap] |
rs4961437 | 0.82[CEU][hapmap] |
rs4961539 | 0.82[CEU][hapmap] |
rs4961544 | 0.82[CEU][hapmap] |
rs4961545 | 0.82[CEU][hapmap] |
rs4961547 | 0.82[CEU][hapmap] |
rs4961552 | 0.82[CEU][hapmap] |
rs4961555 | 0.81[CEU][hapmap] |
rs645117 | 0.82[CEU][hapmap] |
rs6475139 | 0.81[CEU][hapmap] |
rs6475141 | 0.82[CEU][hapmap] |
rs6475143 | 0.82[CEU][hapmap] |
rs6475144 | 0.81[CEU][hapmap] |
rs654521 | 0.82[CEU][hapmap] |
rs7022060 | 0.82[CEU][hapmap] |
rs7028779 | 0.81[CEU][hapmap] |
rs7031133 | 0.81[CEU][hapmap] |
rs7038186 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs7041840 | 0.82[CEU][hapmap] |
rs7046933 | 0.82[CEU][hapmap] |
rs753393 | 1.00[CEU][hapmap];0.85[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap];0.91[MEX][hapmap];0.95[TSI][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs7848397 | 0.82[CEU][hapmap] |
rs7849084 | 0.81[CEU][hapmap] |
rs7851890 | 0.82[CEU][hapmap] |
rs7854724 | 0.82[CEU][hapmap] |
rs7862069 | 0.82[CEU][hapmap] |
rs7864919 | 0.82[CEU][hapmap] |
rs7870101 | 0.82[CEU][hapmap] |
rs7873708 | 0.82[CEU][hapmap] |
rs870271 | 0.82[CEU][hapmap] |
rs9298774 | 0.82[CEU][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv892658 | chr9:17041557-17532840 | Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
2 | nsv892661 | chr9:17134245-17532840 | Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
3 | nsv613693 | chr9:17147191-17710407 | Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
4 | nsv471287 | chr9:17165698-17708814 | Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
5 | nsv466269 | chr9:17165698-17710407 | Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
6 | nsv466271 | chr9:17329964-17438391 | Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
7 | nsv613696 | chr9:17329964-17438391 | Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
8 | nsv892668 | chr9:17371690-17532840 | Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
9 | nsv892669 | chr9:17378776-17438391 | Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
10 | nsv892670 | chr9:17378776-17507277 | Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
11 | nsv892671 | chr9:17378776-17610211 | Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
12 | nsv466273 | chr9:17391531-17436662 | Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
13 | nsv613697 | chr9:17391531-17436662 | Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
14 | nsv523411 | chr9:17394536-17454799 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
15 | esv2422265 | chr9:17396711-17598187 | Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 4 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr9:17368400-17457800 | Weak transcription | Pancreas | Pancrea |
2 | chr9:17396200-17440000 | Weak transcription | Adipose Nuclei | Adipose |
3 | chr9:17408000-17437200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
4 | chr9:17411800-17435600 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
5 | chr9:17411800-17439800 | Weak transcription | Left Ventricle | heart |
6 | chr9:17411800-17481000 | Weak transcription | Aorta | Aorta |
7 | chr9:17412200-17440200 | Weak transcription | Fetal Stomach | stomach |
8 | chr9:17412200-17443600 | Weak transcription | Ovary | ovary |
9 | chr9:17425400-17449600 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
10 | chr9:17426400-17466800 | Weak transcription | Primary hematopoietic stem cells | blood |
11 | chr9:17428000-17435800 | Weak transcription | Liver | Liver |
12 | chr9:17428600-17440200 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
13 | chr9:17431000-17453400 | Weak transcription | Fetal Lung | lung |
14 | chr9:17434000-17437200 | ZNF genes & repeats | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
15 | chr9:17434000-17453600 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
16 | chr9:17434000-17453600 | Weak transcription | Foreskin Melanocyte Primary Cells skin03 | Skin |