Variant report

Variant	rs2225598
Chromosome Location	chr9:17365613-17365614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 247 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:235)

rs_ID	r²[population]
rs10046851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10114083	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10114662	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs10114688	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10114730	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10116093	0.89[CEU][hapmap];0.93[EUR][1000 genomes]
rs10116140	0.93[EUR][1000 genomes]
rs10116428	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10119297	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10119370	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10120757	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10121841	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10122987	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10123109	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs10123715	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10123745	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10124487	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10124513	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10125333	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1023778	0.84[JPT][hapmap]
rs10283690	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10481559	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10738474	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10738476	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10756860	0.88[EUR][1000 genomes]
rs10756866	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10756867	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10756869	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs10756874	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10756875	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10756876	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10756877	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10756878	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10810740	0.85[EUR][1000 genomes]
rs10810748	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10810749	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10810750	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10810751	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10810752	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10810754	0.83[EUR][1000 genomes]
rs10810756	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10810761	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs10810763	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10810764	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10810765	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10810770	0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10810773	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10810774	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10810775	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10810777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10810781	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs10810782	0.82[EUR][1000 genomes]
rs10962922	0.82[JPT][hapmap]
rs10962939	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs10962947	0.83[EUR][1000 genomes]
rs10962950	0.86[EUR][1000 genomes]
rs10962982	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10962988	0.82[CEU][hapmap]
rs10963026	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10963027	0.83[EUR][1000 genomes]
rs10963042	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10963057	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10963063	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1113379	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs12236820	0.81[EUR][1000 genomes]
rs12337154	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12337171	0.94[EUR][1000 genomes]
rs12339564	0.81[EUR][1000 genomes]
rs12342180	0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12345267	0.81[CEU][hapmap];0.81[EUR][1000 genomes]
rs12379102	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12379104	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1318162	0.85[CHB][hapmap];0.89[JPT][hapmap]
rs13290922	0.83[EUR][1000 genomes]
rs1372702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1442516	0.89[CEU][hapmap]
rs1442523	0.93[EUR][1000 genomes]
rs1442524	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs1442533	0.92[CEU][hapmap];0.84[EUR][1000 genomes]
rs1576958	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs1576962	0.83[EUR][1000 genomes]
rs1582029	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs1582031	0.83[CEU][hapmap]
rs1583987	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1583989	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1591138	0.83[CEU][hapmap]
rs1596193	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs1759454	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1759457	0.81[JPT][hapmap]
rs1759458	0.82[JPT][hapmap]
rs1759464	0.87[JPT][hapmap]
rs1759465	0.81[JPT][hapmap]
rs1759613	0.86[EUR][1000 genomes]
rs1889114	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs1930641	0.82[JPT][hapmap]
rs1953105	0.83[CEU][hapmap]
rs2044119	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2044120	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2099858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2151290	0.93[CEU][hapmap];0.81[EUR][1000 genomes]
rs2584535	0.83[CEU][hapmap]
rs2584547	0.82[CEU][hapmap]
rs2584554	0.82[CEU][hapmap]
rs2593387	0.91[EUR][1000 genomes]
rs2593412	0.83[CEU][hapmap]
rs2593414	0.82[CEU][hapmap]
rs2779773	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs2779775	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs2779776	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2780197	0.82[CEU][hapmap]
rs2780198	0.83[CEU][hapmap]
rs2780199	0.82[CEU][hapmap]
rs2780204	0.82[JPT][hapmap]
rs2780206	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2780212	0.80[EUR][1000 genomes]
rs2815173	0.82[JPT][hapmap]
rs2990670	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3119848	0.82[JPT][hapmap]
rs34105027	0.91[EUR][1000 genomes]
rs36057268	0.94[EUR][1000 genomes]
rs3765040	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3780258	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3808784	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3814137	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs3814139	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs3824391	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3824392	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3861711	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4128606	0.81[CHB][hapmap]
rs4246135	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4246136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4272484	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs4409489	0.86[EUR][1000 genomes]
rs4424358	0.86[EUR][1000 genomes]
rs4563978	0.95[EUR][1000 genomes]
rs4621917	0.82[JPT][hapmap]
rs4961437	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4961439	0.93[EUR][1000 genomes]
rs4961534	0.82[JPT][hapmap]
rs4961539	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4961540	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4961541	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4961542	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4961543	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4961544	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4961545	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4961547	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4961548	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4961551	0.82[JPT][hapmap]
rs4961552	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4961553	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4961554	0.82[JPT][hapmap]
rs4961555	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4961557	0.92[CEU][hapmap];0.92[EUR][1000 genomes]
rs585682	0.81[JPT][hapmap]
rs593614	0.88[EUR][1000 genomes]
rs595894	0.87[EUR][1000 genomes]
rs600041	0.82[JPT][hapmap]
rs600133	0.82[JPT][hapmap]
rs605916	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs613966	0.82[JPT][hapmap]
rs614471	0.82[JPT][hapmap]
rs619380	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs632265	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs645117	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs646025	0.82[JPT][hapmap]
rs6475122	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs6475125	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs6475129	0.82[JPT][hapmap]
rs6475137	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6475139	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6475141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6475142	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6475143	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6475144	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6475145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6475147	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs654521	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs664447	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs670058	0.88[EUR][1000 genomes]
rs670511	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs679666	0.81[JPT][hapmap]
rs7018705	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7022024	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7022060	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7027539	0.82[JPT][hapmap]
rs7028593	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7028779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7028930	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7030452	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7031133	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7033974	0.86[EUR][1000 genomes]
rs7034768	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs7035525	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs7037111	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7038064	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7038186	0.82[CEU][hapmap];0.81[EUR][1000 genomes]
rs7038197	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7041840	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs7043703	0.84[CHB][hapmap]
rs7044462	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7044823	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7046327	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs7046933	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes]
rs753393	0.81[CEU][hapmap]
rs7848397	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7848980	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7849084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7849085	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7851890	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7854724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7854802	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7854818	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7858530	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7862069	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7864270	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7864271	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7864650	0.86[EUR][1000 genomes]
rs7864919	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7865766	0.96[EUR][1000 genomes]
rs7868684	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7868700	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7869727	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7870101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7871926	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7872831	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7873708	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7874453	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs870270	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs870271	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9298772	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9298773	0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9298774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9406666	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9695844	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv892661	chr9:17134245-17532840	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv613693	chr9:17147191-17710407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv471287	chr9:17165698-17708814	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv466269	chr9:17165698-17710407	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv466270	chr9:17236376-17377629	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv613694	chr9:17236376-17377629	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv892665	chr9:17250170-17371690	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv466271	chr9:17329964-17438391	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv613696	chr9:17329964-17438391	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1015524	chr9:17350843-17419424	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2225598	C9orf39	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17292200-17367200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr9:17329200-17367000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr9:17330200-17367000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:17332200-17367000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr9:17332400-17367600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr9:17332800-17367400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr9:17335000-17367000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr9:17336800-17367200	Weak transcription	Fetal Intestine Small	intestine
9	chr9:17338800-17371800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr9:17339400-17367000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr9:17339400-17367200	Weak transcription	Gastric	stomach
12	chr9:17341200-17367600	Weak transcription	Spleen	Spleen
13	chr9:17341400-17367000	Weak transcription	Right Ventricle	heart
14	chr9:17341400-17369600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr9:17343000-17366800	Weak transcription	Pancreas	Pancrea
16	chr9:17343000-17367000	Weak transcription	Aorta	Aorta
17	chr9:17343200-17367000	Weak transcription	Dnd41	blood
18	chr9:17343800-17367000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr9:17344400-17368800	Weak transcription	A549	lung
20	chr9:17346600-17367200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:17346600-17367200	Weak transcription	Fetal Muscle Leg	muscle
22	chr9:17346800-17367000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr9:17346800-17367000	Weak transcription	Adipose Nuclei	Adipose
24	chr9:17347000-17367000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr9:17347400-17366800	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr9:17347400-17367000	Weak transcription	Fetal Lung	lung
27	chr9:17350600-17367600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr9:17353800-17367000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr9:17354400-17367000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr9:17354800-17368000	Weak transcription	Fetal Intestine Large	intestine
31	chr9:17355400-17367000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr9:17355600-17372200	Weak transcription	Primary hematopoietic stem cells	blood
33	chr9:17357000-17367200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr9:17361800-17366800	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr9:17361800-17367000	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr9:17361800-17367200	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr9:17362000-17366800	Weak transcription	Ovary	ovary
38	chr9:17362000-17369400	Weak transcription	Fetal Kidney	kidney
39	chr9:17362000-17372600	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr9:17362000-17394600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr9:17362200-17367000	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr9:17362400-17367000	Weak transcription	Liver	Liver
43	chr9:17363400-17367000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr9:17363400-17367600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr9:17364000-17367000	Weak transcription	Fetal Muscle Trunk	muscle
46	chr9:17364000-17368600	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr9:17364200-17368800	Weak transcription	Brain Substantia Nigra	brain
48	chr9:17364600-17369000	Weak transcription	Skeletal Muscle Female	skeletal muscle
49	chr9:17364600-17376800	Weak transcription	Hela-S3	cervix
50	chr9:17364800-17367000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links