Variant report

Variant	rs1759464
Chromosome Location	chr9:17305517-17305518
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 177 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:162)

rs_ID	r²[population]
rs10046851	0.86[JPT][hapmap]
rs10115784	0.96[YRI][hapmap]
rs10116428	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs10119233	0.92[CEU][hapmap]
rs10119370	0.87[JPT][hapmap]
rs10120733	1.00[CEU][hapmap];0.85[JPT][hapmap]
rs10120761	1.00[CEU][hapmap]
rs10123715	0.87[JPT][hapmap]
rs1023778	0.93[JPT][hapmap]
rs10511633	1.00[JPT][hapmap];0.91[YRI][hapmap]
rs10738474	0.86[JPT][hapmap]
rs10756867	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs10756875	0.85[JPT][hapmap]
rs10756878	0.87[JPT][hapmap]
rs10756879	0.87[YRI][hapmap]
rs10810764	0.87[JPT][hapmap]
rs10810765	0.86[JPT][hapmap]
rs10810783	0.92[CEU][hapmap]
rs10810784	1.00[CEU][hapmap]
rs10962922	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10962924	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10962939	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs10962941	1.00[CEU][hapmap]
rs10963081	1.00[CEU][hapmap]
rs1113379	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1113380	0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs1113382	1.00[CEU][hapmap]
rs12236896	0.96[YRI][hapmap]
rs12237062	0.95[YRI][hapmap]
rs12346397	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs12379104	0.86[JPT][hapmap]
rs1372702	0.87[JPT][hapmap]
rs1413418	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1413419	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1442521	0.92[CEU][hapmap]
rs1442522	0.83[CEU][hapmap]
rs1442525	0.92[CEU][hapmap]
rs1442526	0.92[CEU][hapmap]
rs1576958	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs1582029	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs16935416	0.95[YRI][hapmap]
rs1759452	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1759453	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1759457	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs1759458	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1759459	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1759460	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1759462	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1759463	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1759465	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1759616	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs1930639	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs1930641	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs1930648	1.00[CEU][hapmap]
rs2039413	1.00[CEU][hapmap];0.85[CHB][hapmap];0.93[JPT][hapmap]
rs2044119	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs2099858	0.86[JPT][hapmap]
rs2151289	0.93[JPT][hapmap]
rs2225598	0.87[JPT][hapmap]
rs2584546	1.00[CEU][hapmap]
rs2593389	1.00[CEU][hapmap]
rs2774621	0.91[YRI][hapmap]
rs2774622	0.85[CHB][hapmap];0.93[JPT][hapmap];0.92[YRI][hapmap]
rs2774623	1.00[JPT][hapmap];0.92[YRI][hapmap]
rs2774626	0.92[YRI][hapmap]
rs2779763	0.85[CHB][hapmap];0.93[JPT][hapmap]
rs2779767	0.81[JPT][hapmap]
rs2779771	0.91[YRI][hapmap]
rs2779772	0.91[YRI][hapmap]
rs2780204	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2780205	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2780214	1.00[CEU][hapmap]
rs2815173	1.00[JPT][hapmap]
rs2815175	0.95[YRI][hapmap]
rs2815182	1.00[JPT][hapmap]
rs2990670	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs3119848	1.00[JPT][hapmap]
rs3122360	0.85[CHB][hapmap];0.87[JPT][hapmap]
rs3739488	0.92[CEU][hapmap]
rs3739489	0.82[YRI][hapmap]
rs3780258	0.87[JPT][hapmap]
rs3808781	0.92[CEU][hapmap]
rs3808785	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs3814137	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs3814139	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs3824392	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs3891457	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs4128606	0.93[JPT][hapmap]
rs4147023	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs4246136	0.87[JPT][hapmap]
rs4289910	0.96[YRI][hapmap]
rs4554574	0.95[YRI][hapmap]
rs4621917	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs4961437	0.87[JPT][hapmap]
rs4961534	1.00[JPT][hapmap]
rs4961539	0.87[JPT][hapmap]
rs4961544	0.87[JPT][hapmap]
rs4961545	0.87[JPT][hapmap]
rs4961547	0.87[JPT][hapmap]
rs4961551	1.00[CEU][hapmap];0.87[JPT][hapmap];0.95[YRI][hapmap]
rs4961552	0.86[JPT][hapmap]
rs4961554	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs4961556	0.92[CEU][hapmap]
rs585682	1.00[CEU][hapmap];0.93[CHB][hapmap];0.93[JPT][hapmap]
rs600041	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs600133	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs601960	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.95[YRI][hapmap]
rs613966	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs614412	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs614471	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs620280	0.95[YRI][hapmap]
rs631300	1.00[CEU][hapmap]
rs632176	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs634383	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs634446	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs642582	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs646025	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs647013	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs6475122	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6475125	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs6475128	0.92[CEU][hapmap]
rs6475129	0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs6475139	0.87[JPT][hapmap]
rs6475140	0.96[YRI][hapmap]
rs6475141	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs6475142	0.86[JPT][hapmap]
rs6475143	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs6475144	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs654521	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs664447	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs673587	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs679666	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs7020918	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7023540	0.92[CEU][hapmap]
rs7027292	0.92[CEU][hapmap]
rs7027539	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap]
rs7028779	0.86[JPT][hapmap]
rs7031133	0.86[JPT][hapmap]
rs7034768	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7035276	0.92[CEU][hapmap]
rs7035357	0.92[CEU][hapmap]
rs7035525	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7042700	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs7043703	0.92[CEU][hapmap];0.85[CHB][hapmap];0.85[JPT][hapmap]
rs7046327	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7046933	0.87[JPT][hapmap]
rs7047093	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap]
rs7848397	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs7849084	0.87[JPT][hapmap]
rs7851890	0.87[JPT][hapmap]
rs7854724	0.87[JPT][hapmap]
rs7862069	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs7864296	1.00[JPT][hapmap]
rs7864919	0.87[JPT][hapmap]
rs7865807	1.00[CEU][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]
rs7870101	0.81[CHB][hapmap];0.87[JPT][hapmap]
rs7873708	0.87[JPT][hapmap]
rs7874945	0.92[CEU][hapmap];0.87[YRI][hapmap]
rs870270	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs9298774	0.87[JPT][hapmap]
rs9407787	0.93[JPT][hapmap];0.95[YRI][hapmap]
rs9657595	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv892661	chr9:17134245-17532840	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv428537	chr9:17146369-17308494	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv613693	chr9:17147191-17710407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv471287	chr9:17165698-17708814	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	nsv466269	chr9:17165698-17710407	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv892662	chr9:17168867-17329964	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv1031269	chr9:17204320-17316969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv466270	chr9:17236376-17377629	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv613694	chr9:17236376-17377629	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv892663	chr9:17243746-17329964	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv892665	chr9:17250170-17371690	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	nsv613695	chr9:17273731-17348412	Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17262800-17339800	Weak transcription	Left Ventricle	heart
2	chr9:17274800-17323200	Weak transcription	Aorta	Aorta
3	chr9:17284400-17309600	Weak transcription	Ovary	ovary
4	chr9:17284400-17344800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr9:17284800-17308000	Weak transcription	Fetal Lung	lung
6	chr9:17285000-17311600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr9:17292200-17367200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr9:17293600-17308600	Weak transcription	Fetal Muscle Trunk	muscle
9	chr9:17293800-17314200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr9:17294000-17306400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr9:17294000-17317600	Weak transcription	Liver	Liver
12	chr9:17294000-17334000	Weak transcription	Fetal Stomach	stomach
13	chr9:17294000-17346000	Weak transcription	Fetal Muscle Leg	muscle
14	chr9:17294600-17311000	Weak transcription	Primary monocytes fromperipheralblood	blood
15	chr9:17299400-17312000	Weak transcription	A549	lung
16	chr9:17300800-17318600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr9:17301200-17332200	Weak transcription	Monocytes-CD14+_RO01746	blood

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