Variant report

Variant	rs2593389
Chromosome Location	chr9:17410831-17410832
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 243 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:226)

rs_ID	r²[population]
rs10114324	0.93[EUR][1000 genomes]
rs10117379	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10119233	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10119863	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10119902	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10120006	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10120013	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10120733	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10120761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10125886	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1023778	0.94[CHB][hapmap];0.88[JPT][hapmap];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10738477	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10756861	0.92[EUR][1000 genomes]
rs10756862	0.93[EUR][1000 genomes]
rs10756863	0.93[EUR][1000 genomes]
rs10756864	0.93[EUR][1000 genomes]
rs10756865	0.93[EUR][1000 genomes]
rs10756879	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.96[ASN][1000 genomes]
rs10810753	0.93[EUR][1000 genomes]
rs10810783	0.88[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10810784	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs10962922	0.94[CEU][hapmap];0.89[CHB][hapmap];0.80[JPT][hapmap]
rs10962924	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap]
rs10962939	1.00[CEU][hapmap];0.88[CHB][hapmap];0.80[JPT][hapmap]
rs10962941	1.00[CEU][hapmap]
rs10962960	0.89[EUR][1000 genomes]
rs10962977	0.83[EUR][1000 genomes]
rs10962979	0.90[EUR][1000 genomes]
rs10962981	0.87[EUR][1000 genomes]
rs10962983	0.85[EUR][1000 genomes]
rs10962984	0.92[EUR][1000 genomes]
rs10962985	0.92[EUR][1000 genomes]
rs10962986	0.92[EUR][1000 genomes]
rs10962987	0.92[EUR][1000 genomes]
rs10962989	0.93[EUR][1000 genomes]
rs10963010	0.93[EUR][1000 genomes]
rs10963011	0.93[EUR][1000 genomes]
rs10963013	0.93[EUR][1000 genomes]
rs10963014	0.93[EUR][1000 genomes]
rs10963028	0.92[EUR][1000 genomes]
rs10963081	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10963085	0.97[ASN][1000 genomes]
rs10963088	0.99[ASN][1000 genomes]
rs10963103	0.87[CHB][hapmap];0.92[JPT][hapmap];0.90[ASN][1000 genomes]
rs10963105	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1113379	1.00[CEU][hapmap];0.88[CHB][hapmap];0.80[JPT][hapmap];0.92[EUR][1000 genomes]
rs1113380	0.89[CHB][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs1113381	0.90[EUR][1000 genomes]
rs1113382	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs11543981	0.89[EUR][1000 genomes]
rs11562139	0.87[EUR][1000 genomes]
rs12000610	0.87[EUR][1000 genomes]
rs12238753	0.87[EUR][1000 genomes]
rs12346397	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs1318162	0.83[JPT][hapmap]
rs13288412	0.88[EUR][1000 genomes]
rs13289731	0.87[EUR][1000 genomes]
rs1348279	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1372700	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1372704	0.94[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1413418	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs1413419	1.00[CEU][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs1442512	0.83[YRI][hapmap]
rs1442518	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1442520	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1442521	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1442522	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1442525	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1442526	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1576958	1.00[CEU][hapmap];0.88[CHB][hapmap];0.80[JPT][hapmap]
rs1582029	1.00[CEU][hapmap];0.88[CHB][hapmap];0.80[JPT][hapmap]
rs1583985	0.81[YRI][hapmap]
rs16935416	0.82[YRI][hapmap]
rs1759452	0.94[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs1759453	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs1759457	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs1759458	1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap];0.93[EUR][1000 genomes]
rs1759459	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs1759460	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs1759461	0.93[EUR][1000 genomes]
rs1759462	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs1759463	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs1759464	1.00[CEU][hapmap]
rs1759465	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[EUR][1000 genomes]
rs1759615	0.90[EUR][1000 genomes]
rs1759616	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs1759617	0.88[EUR][1000 genomes]
rs1759619	0.93[EUR][1000 genomes]
rs1759626	0.91[EUR][1000 genomes]
rs1930639	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs1930641	1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap];0.82[YRI][hapmap]
rs1930643	0.88[EUR][1000 genomes]
rs1930644	0.90[EUR][1000 genomes]
rs1930645	0.91[EUR][1000 genomes]
rs1930646	0.92[EUR][1000 genomes]
rs1930647	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1930648	0.92[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2010086	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2039413	0.88[CEU][hapmap];0.89[CHB][hapmap]
rs2083694	0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2083695	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2095145	0.91[EUR][1000 genomes]
rs2099859	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2104914	0.93[EUR][1000 genomes]
rs2119906	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2119907	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2165688	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2210551	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2274916	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2441991	0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2483208	0.93[EUR][1000 genomes]
rs2584539	0.94[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs2584546	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2584548	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2584549	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2584550	0.95[ASN][1000 genomes]
rs2584551	0.97[ASN][1000 genomes]
rs2593388	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2593390	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2593397	0.82[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs2593416	0.93[ASN][1000 genomes]
rs2593418	0.93[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2779774	0.93[EUR][1000 genomes]
rs2779779	0.93[EUR][1000 genomes]
rs2780203	0.94[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs2780204	1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap];0.93[EUR][1000 genomes]
rs2780205	0.82[CHB][hapmap];0.81[JPT][hapmap];0.92[EUR][1000 genomes]
rs2780207	0.93[EUR][1000 genomes]
rs2780208	0.92[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2780210	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2780211	0.83[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs2780213	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];1.00[ASN][1000 genomes]
rs2780214	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2990958	0.93[EUR][1000 genomes]
rs3739488	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3739489	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.96[ASN][1000 genomes]
rs3808781	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3808785	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs3814137	1.00[CEU][hapmap];0.88[CHB][hapmap];0.80[JPT][hapmap]
rs3814139	1.00[CEU][hapmap];0.88[CHB][hapmap];0.80[JPT][hapmap]
rs3891457	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4147023	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap]
rs4554574	0.81[YRI][hapmap]
rs4621917	1.00[CEU][hapmap];0.94[CHB][hapmap];0.80[JPT][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4961551	1.00[CEU][hapmap];0.94[CHB][hapmap];0.82[JPT][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4961554	1.00[CEU][hapmap];0.94[CHB][hapmap];0.80[JPT][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4961556	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs5001765	0.91[ASN][1000 genomes]
rs55829722	0.93[EUR][1000 genomes]
rs56402716	0.88[EUR][1000 genomes]
rs57850734	0.89[EUR][1000 genomes]
rs582134	0.93[EUR][1000 genomes]
rs585682	0.94[CEU][hapmap];0.80[CHB][hapmap];0.93[EUR][1000 genomes]
rs593552	0.93[EUR][1000 genomes]
rs599626	0.93[EUR][1000 genomes]
rs600041	0.94[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap];0.93[EUR][1000 genomes]
rs600133	1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap];0.93[EUR][1000 genomes]
rs601960	1.00[CEU][hapmap];0.81[CHB][hapmap];0.82[YRI][hapmap];0.93[EUR][1000 genomes]
rs606382	0.93[EUR][1000 genomes]
rs610175	0.93[EUR][1000 genomes]
rs613966	1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap];0.82[YRI][hapmap];0.93[EUR][1000 genomes]
rs614412	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes]
rs614471	1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap];0.93[EUR][1000 genomes]
rs619357	0.92[EUR][1000 genomes]
rs622392	0.80[EUR][1000 genomes]
rs631300	0.85[CEU][hapmap];0.93[EUR][1000 genomes]
rs632176	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs632255	0.93[EUR][1000 genomes]
rs632313	0.93[EUR][1000 genomes]
rs634383	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs634446	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs636093	0.93[EUR][1000 genomes]
rs642582	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs643776	0.93[EUR][1000 genomes]
rs646025	1.00[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap];0.82[YRI][hapmap];0.93[EUR][1000 genomes]
rs647013	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.91[EUR][1000 genomes]
rs6475122	1.00[CEU][hapmap];0.88[CHB][hapmap];0.80[JPT][hapmap]
rs6475125	1.00[CEU][hapmap];0.88[CHB][hapmap];0.80[JPT][hapmap]
rs6475126	0.90[EUR][1000 genomes]
rs6475127	0.93[EUR][1000 genomes]
rs6475128	0.94[CEU][hapmap];0.90[EUR][1000 genomes]
rs6475129	0.94[CEU][hapmap];0.81[CHB][hapmap];0.80[JPT][hapmap];0.92[EUR][1000 genomes]
rs659637	0.90[EUR][1000 genomes]
rs664447	1.00[CEU][hapmap];0.88[CHB][hapmap];0.80[JPT][hapmap];0.93[EUR][1000 genomes]
rs672799	0.93[EUR][1000 genomes]
rs673587	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap];0.93[EUR][1000 genomes]
rs677490	0.93[EUR][1000 genomes]
rs679666	1.00[CEU][hapmap];0.81[CHB][hapmap];0.93[EUR][1000 genomes]
rs7018523	0.81[EUR][1000 genomes]
rs7018856	0.89[EUR][1000 genomes]
rs7020918	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.87[EUR][1000 genomes]
rs7023305	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7023540	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7027051	0.93[EUR][1000 genomes]
rs7027292	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7027539	1.00[CEU][hapmap];0.94[CHB][hapmap];0.80[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7034768	1.00[CEU][hapmap];0.88[CHB][hapmap];0.80[JPT][hapmap]
rs7035276	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7035357	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7035525	1.00[CEU][hapmap];0.88[CHB][hapmap]
rs7037019	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7037041	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7037408	0.87[EUR][1000 genomes]
rs7040666	0.87[EUR][1000 genomes]
rs7042700	1.00[CEU][hapmap];0.94[CHB][hapmap];0.80[JPT][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7043703	0.94[CEU][hapmap];0.88[CHB][hapmap]
rs7046327	1.00[CEU][hapmap];0.88[CHB][hapmap];0.80[JPT][hapmap];0.87[EUR][1000 genomes]
rs7046951	0.87[EUR][1000 genomes]
rs7047093	1.00[CEU][hapmap];0.89[CHB][hapmap];0.81[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7848118	0.93[EUR][1000 genomes]
rs7862336	0.91[EUR][1000 genomes]
rs7865807	1.00[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7870334	0.87[CHB][hapmap];0.87[JPT][hapmap];0.93[ASN][1000 genomes]
rs7870427	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7872910	0.93[ASN][1000 genomes]
rs7874597	0.93[EUR][1000 genomes]
rs7874945	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs870270	1.00[CEU][hapmap];0.88[CHB][hapmap];0.80[JPT][hapmap];0.82[YRI][hapmap];0.93[EUR][1000 genomes]
rs9298777	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9298778	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9406667	0.88[EUR][1000 genomes]
rs9407792	0.93[EUR][1000 genomes]
rs9407793	0.93[EUR][1000 genomes]
rs9407794	0.93[EUR][1000 genomes]
rs9407804	0.93[EUR][1000 genomes]
rs9657595	1.00[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv892661	chr9:17134245-17532840	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv613693	chr9:17147191-17710407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv471287	chr9:17165698-17708814	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv466269	chr9:17165698-17710407	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv466271	chr9:17329964-17438391	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv613696	chr9:17329964-17438391	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1015524	chr9:17350843-17419424	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv892668	chr9:17371690-17532840	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv892669	chr9:17378776-17438391	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv892670	chr9:17378776-17507277	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
13	nsv892671	chr9:17378776-17610211	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
14	nsv466273	chr9:17391531-17436662	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv613697	chr9:17391531-17436662	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv523411	chr9:17394536-17454799	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
17	esv2422265	chr9:17396711-17598187	Flanking Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17368400-17457800	Weak transcription	Pancreas	Pancrea
2	chr9:17368600-17411200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr9:17368600-17411400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:17368600-17411400	Weak transcription	Aorta	Aorta
5	chr9:17368800-17411400	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr9:17369400-17411200	Weak transcription	Fetal Muscle Trunk	muscle
7	chr9:17380600-17411000	Weak transcription	Left Ventricle	heart
8	chr9:17381000-17411200	Weak transcription	Fetal Muscle Leg	muscle
9	chr9:17381200-17411200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr9:17381400-17422800	Weak transcription	Colon Smooth Muscle	Colon
11	chr9:17385400-17411400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:17387000-17411200	Weak transcription	Dnd41	blood
13	chr9:17388200-17411400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr9:17391600-17411200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr9:17393400-17411400	Weak transcription	Lung	lung
16	chr9:17393400-17433000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr9:17393600-17412800	Weak transcription	Fetal Kidney	kidney
18	chr9:17393600-17413000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr9:17393800-17413000	Weak transcription	A549	lung
20	chr9:17395400-17413600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr9:17395400-17417800	Weak transcription	NHDF-Ad	bronchial
22	chr9:17395600-17411200	Weak transcription	Fetal Lung	lung
23	chr9:17396200-17413200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr9:17396200-17440000	Weak transcription	Adipose Nuclei	Adipose
25	chr9:17396800-17411000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr9:17397400-17411000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr9:17397800-17411000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:17397800-17411200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr9:17398800-17430600	Weak transcription	HSMM	muscle
30	chr9:17399000-17411200	Weak transcription	Ovary	ovary
31	chr9:17399200-17411000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr9:17399200-17411200	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr9:17399400-17425400	Weak transcription	Fetal Heart	heart
34	chr9:17405200-17411200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr9:17406000-17411200	Weak transcription	Fetal Stomach	stomach
36	chr9:17406200-17411000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr9:17407000-17411000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr9:17407000-17412600	Strong transcription	Liver	Liver
39	chr9:17408000-17437200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr9:17408200-17411200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr9:17408600-17411000	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr9:17408600-17411200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr9:17409000-17411200	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr9:17409200-17412800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr9:17409600-17425400	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr9:17410000-17413000	Weak transcription	NHLF	lung
47	chr9:17410200-17411200	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr9:17410200-17412600	Weak transcription	Fetal Intestine Large	intestine
49	chr9:17410200-17412800	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr9:17410600-17411200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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