Variant report

Variant	rs16935416
Chromosome Location	chr9:17235156-17235157
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 156 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:142)

rs_ID	r²[population]
rs10115784	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.94[EUR][1000 genomes]
rs1023778	0.82[YRI][hapmap]
rs10511633	0.81[JPT][hapmap];0.92[YRI][hapmap]
rs10738475	0.81[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs10756862	0.84[AFR][1000 genomes]
rs10756864	0.84[AFR][1000 genomes]
rs10756879	0.84[CEU][hapmap];0.92[YRI][hapmap]
rs10962908	0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10962909	0.85[AFR][1000 genomes]
rs10962918	0.94[AFR][1000 genomes]
rs10962922	0.80[JPT][hapmap]
rs10962924	0.81[JPT][hapmap]
rs10962926	0.82[AFR][1000 genomes]
rs10962939	0.81[JPT][hapmap]
rs10962940	0.83[AFR][1000 genomes]
rs10962941	0.93[ASW][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes]
rs10962957	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10962960	0.88[AFR][1000 genomes]
rs10962978	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10962979	0.90[AFR][1000 genomes]
rs10962984	0.83[AFR][1000 genomes]
rs10962995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10963013	0.83[AFR][1000 genomes]
rs10963056	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes]
rs10963067	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.87[EUR][1000 genomes]
rs10963070	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[EUR][1000 genomes]
rs1113379	0.81[JPT][hapmap]
rs1113380	0.81[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs1113381	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs11525918	0.83[AFR][1000 genomes]
rs11531702	0.83[ASN][1000 genomes]
rs11543981	0.88[AFR][1000 genomes]
rs11560447	0.91[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs11562139	0.91[AFR][1000 genomes]
rs12164282	0.96[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12235811	0.92[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12236166	0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12236896	0.92[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12237062	1.00[ASW][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];0.93[JPT][hapmap];0.84[MEX][hapmap];0.84[MKK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12237892	0.83[AFR][1000 genomes]
rs12238680	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12346397	0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs1348279	0.84[AFR][1000 genomes]
rs1413418	0.81[JPT][hapmap];0.82[YRI][hapmap]
rs1413419	0.81[JPT][hapmap]
rs1576958	0.93[ASW][hapmap];0.81[JPT][hapmap]
rs1582029	0.81[JPT][hapmap]
rs1583985	1.00[CEU][hapmap]
rs1759452	0.80[JPT][hapmap]
rs1759453	0.81[JPT][hapmap]
rs1759457	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs1759458	0.81[ASW][hapmap];0.81[JPT][hapmap]
rs1759459	0.81[JPT][hapmap]
rs1759460	0.81[JPT][hapmap]
rs1759462	0.81[JPT][hapmap]
rs1759463	0.81[JPT][hapmap]
rs1759464	0.95[YRI][hapmap]
rs1759465	0.81[ASW][hapmap]
rs1759615	0.80[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs1759616	0.81[JPT][hapmap]
rs1930639	0.81[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs1930641	0.93[ASW][hapmap];0.81[JPT][hapmap];0.90[LWK][hapmap];1.00[YRI][hapmap]
rs2083694	1.00[CEU][hapmap];0.82[YRI][hapmap]
rs2274916	0.92[CEU][hapmap];1.00[GIH][hapmap]
rs2483132	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2584548	1.00[CEU][hapmap]
rs2593389	0.82[YRI][hapmap]
rs2593418	1.00[CEU][hapmap]
rs2774621	0.91[YRI][hapmap]
rs2774622	0.92[YRI][hapmap]
rs2774623	0.81[JPT][hapmap];0.92[YRI][hapmap]
rs2774626	0.92[YRI][hapmap]
rs2774628	0.84[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs2779771	0.91[YRI][hapmap]
rs2779772	0.92[YRI][hapmap]
rs2779774	0.86[AFR][1000 genomes]
rs2779779	0.83[AFR][1000 genomes]
rs2780203	1.00[CEU][hapmap]
rs2780204	0.81[JPT][hapmap]
rs2780205	0.81[JPT][hapmap]
rs2780213	1.00[CEU][hapmap]
rs2815173	0.81[JPT][hapmap]
rs2815175	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];0.82[LWK][hapmap];0.87[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs3119848	0.81[JPT][hapmap]
rs3739489	0.92[CEU][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];0.88[YRI][hapmap]
rs3808782	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[EUR][1000 genomes]
rs3808785	0.81[JPT][hapmap]
rs3814137	0.81[JPT][hapmap]
rs3814139	0.81[JPT][hapmap]
rs3891457	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs4147023	0.81[JPT][hapmap]
rs4289910	0.92[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs4554574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes]
rs4592125	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs4621917	0.81[ASW][hapmap];0.81[JPT][hapmap]
rs4961534	0.81[JPT][hapmap]
rs4961551	0.93[ASW][hapmap];0.82[LWK][hapmap];1.00[YRI][hapmap]
rs4961554	0.86[ASW][hapmap];0.81[JPT][hapmap];0.82[LWK][hapmap];1.00[YRI][hapmap]
rs55863214	0.92[EUR][1000 genomes]
rs56402716	0.91[AFR][1000 genomes]
rs585682	0.80[JPT][hapmap]
rs600041	0.81[JPT][hapmap]
rs600133	0.81[JPT][hapmap]
rs601960	0.93[ASW][hapmap];0.81[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs606382	0.85[AFR][1000 genomes]
rs613966	0.93[ASW][hapmap];0.81[JPT][hapmap];0.82[LWK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs614412	0.81[JPT][hapmap]
rs614471	0.81[JPT][hapmap]
rs620280	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs632176	0.81[JPT][hapmap]
rs634383	0.81[JPT][hapmap]
rs634446	0.81[JPT][hapmap]
rs642582	0.81[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs646025	0.93[ASW][hapmap];0.81[JPT][hapmap];0.90[LWK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs647013	0.81[JPT][hapmap]
rs6475122	0.81[JPT][hapmap]
rs6475123	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6475125	0.81[JPT][hapmap]
rs6475129	0.81[JPT][hapmap]
rs6475140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs659637	0.87[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs664447	0.93[ASW][hapmap];0.81[JPT][hapmap]
rs673587	0.81[JPT][hapmap]
rs7020918	0.81[JPT][hapmap]
rs7027539	0.86[ASW][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap]
rs7028582	0.90[EUR][1000 genomes]
rs7031361	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.88[YRI][hapmap];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7034768	0.81[JPT][hapmap]
rs7035525	0.86[JPT][hapmap]
rs7042700	1.00[YRI][hapmap]
rs7043703	0.81[JPT][hapmap]
rs7046327	0.81[JPT][hapmap]
rs7047093	0.81[JPT][hapmap];0.92[YRI][hapmap]
rs7862336	0.82[AFR][1000 genomes]
rs7864296	0.81[JPT][hapmap]
rs7865807	0.81[JPT][hapmap];0.86[YRI][hapmap]
rs7868207	0.92[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs7870287	0.83[AFR][1000 genomes]
rs7874945	0.92[YRI][hapmap]
rs870270	0.93[ASW][hapmap];0.81[JPT][hapmap];0.82[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9407787	0.93[ASW][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs9657595	0.92[CEU][hapmap];0.87[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv1023525	chr9:17121773-17236072	Enhancers ZNF genes & repeats Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	nsv892659	chr9:17130360-17236376	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
6	nsv892660	chr9:17134245-17269437	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
7	nsv892661	chr9:17134245-17532840	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv428537	chr9:17146369-17308494	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv613693	chr9:17147191-17710407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
10	nsv471287	chr9:17165698-17708814	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
11	nsv466269	chr9:17165698-17710407	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
12	nsv892662	chr9:17168867-17329964	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv1031269	chr9:17204320-17316969	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv1030291	chr9:17216945-17262803	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17204600-17236000	Weak transcription	Ovary	ovary
2	chr9:17207800-17246400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr9:17217600-17247000	Weak transcription	Left Ventricle	heart
4	chr9:17222200-17242000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr9:17223200-17242200	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr9:17223600-17279400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr9:17224400-17242800	Weak transcription	Colon Smooth Muscle	Colon
8	chr9:17224600-17242200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:17225200-17242000	Weak transcription	Fetal Lung	lung
10	chr9:17225400-17246600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr9:17226200-17241000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr9:17228800-17237600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr9:17229800-17251600	Weak transcription	HSMM	muscle
14	chr9:17231400-17242200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr9:17232000-17241800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr9:17233400-17237600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr9:17233800-17235400	Weak transcription	Liver	Liver
18	chr9:17234400-17242000	Weak transcription	Fetal Muscle Leg	muscle
19	chr9:17234600-17249400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr9:17235000-17249600	Weak transcription	Dnd41	blood

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